PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009117708.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 206aa    MW: 23589.2 Da    PI: 9.9416
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009117708.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.92.4e-225199149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k i+++s+r+vtfskRr g++KKA ELSvL++a++av+ fs+ g++y +
  XP_009117708.1 51 KEIKEDSKRHVTFSKRRRGLFKKAAELSVLTGAKIAVVTFSKCGRIYSF 99
                    689********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.24943103IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-2443102IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-2244116IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-184565IPR002100Transcription factor, MADS-box
PfamPF003191.3E-215399IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-186580IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-1880101IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MEEVRQTLPT TFLKPNEQFQ NPNVLVTQTK KELTKPRNPK TSRGRQKIEI KEIKEDSKRH  60
VTFSKRRRGL FKKAAELSVL TGAKIAVVTF SKCGRIYSFG HVDSLMDKYL RKIPVNLEVY  120
SGDDSAEEGG RPWWERPVES VPEEELEEYI MAMSVLRDKL GKKINDMGSI VPAWPINMMG  180
WKPQMDMQSM GDVTDGVNRC RLGQNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A2e-143699972PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B2e-143699972PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009117708.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117708.11e-153PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLM4ED141e-151M4ED14_BRARP; Uncharacterized protein
STRINGBra026674.1-P1e-152(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17310.18e-77M-type_MADS family protein