PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009117500.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 367aa    MW: 42198.2 Da    PI: 4.7929
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009117500.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32.1e-0690113226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     k  lC ff + G+C+ G +CkF+H+
  XP_009117500.1  90 KSILCEFFKA-GQCQKGFKCKFSHD 113
                     6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.7E-588114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-688113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.27288115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-490113IPR000571Zinc finger, CCCH-type
SMARTSM003562.7159196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.793159197IPR000571Zinc finger, CCCH-type
PfamPF165437.3E-16217296IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MPPKQQPKAD LAKKQKQVED KTFGLKNKNK SKNVQKYVQS LKQSVQPKPD ASKLAAKKKK  60
EEEKAREQEL NELFKVAISQ PKVPVGVDPK SILCEFFKAG QCQKGFKCKF SHDLNIQRKG  120
EKIDIYSDKR DEDGDMEEWD QETLEKVVES KKNEYNQNKP TDIVCKYFLD AVEKKQYGWF  180
WACPNGGKEC HYRHALPPGY ILKSQMKALL EEESQKMPVE EEIENERAKL KTATQMTPAL  240
FMEWKRKKIA ERDAGLAASQ AERAKNDRMS GRELFLSNAS LFVDDAEAFE EYQREKEEEE  300
IEQKEKNKET EAGTSKSSGD AEQKEVEDEE EDDDDDLDMD ELDELEASLS KTSIQIREPN  360
NEGSSSS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.76010.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009117500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895342e-75AC189534.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH001J06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117500.10.0PREDICTED: zinc finger CCCH domain-containing protein 21-like
SwissprotQ9SK740.0C3H21_ARATH; Zinc finger CCCH domain-containing protein 21
TrEMBLA0A078FHG70.0A0A078FHG7_BRANA; BnaA09g43820D protein
TrEMBLA0A397Y3I70.0A0A397Y3I7_BRACM; Uncharacterized protein
TrEMBLM4EQP10.0M4EQP1_BRARP; Uncharacterized protein
STRINGBra031114.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48742333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.10.0C3H family protein