PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009117230.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YA

Protein Properties

Length: 306aa MW: 33541.6 Da PI: 10.4317

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009117230.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103	2.7e-32	183	239	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQyq+Il+RRq+Rakle+++kl +k+rkpylheSRh hAl+R+RgsgGrF XP_009117230.1 183 NEPIFVNAKQYQAILRRRQHRAKLEAQNKL-IKARKPYLHESRHLHALKRARGSGGRF 239 59**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	8.0E-37	181	242	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.866	182	242	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	9.2E-27	184	239	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.5E-22	185	207	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	187	207	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.5E-22	216	239	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010262	Biological Process	somatic embryogenesis
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MQEFHSKDSL SSPTTSWGNS VLSNSNVQGS SSSAMTDNNN NNNTLSLTME MMSAHFPGMK 60 QTGFQLQGHD DSSSTLSTGG GESSGDVASL GGHNSNNRYG HNFVTHLSGH KEIAVSPSGS 120 HPKSILSKVS QNSAPPPTIE ASWPLHGNCF MSFPYASQHM QHPQIGGLMI PSRILLPHNI 180 PENEPIFVNA KQYQAILRRR QHRAKLEAQN KLIKARKPYL HESRHLHALK RARGSGGRFL 240 NTKKLQESKS PPFLATSVKF RQREILGVAV GSSGPELTGN NMDMFQQDPQ LRFSGYPSNH 300 HVSVLM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-19	183	251	2	67	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269\|PubMed:11250072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009117230.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493613	3e-89	AB493613.1 Arabidopsis thaliana At3g14020 mRNA for hypothetical protein, partial cds, clone: RAAt3g14020.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009117230.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-6 isoform X2
Swissprot	Q9LVJ7	1e-123	NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBL	A0A398AS56	0.0	A0A398AS56_BRACM; Uncharacterized protein
STRING	Bra021527.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14020.1	1e-106	nuclear factor Y, subunit A6

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]