PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009117226.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NF-YA | ||||||||
Protein Properties | Length: 308aa MW: 33768.9 Da PI: 10.4317 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103 | 2.8e-32 | 185 | 241 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQyq+Il+RRq+Rakle+++kl +k+rkpylheSRh hAl+R+RgsgGrF XP_009117226.1 185 NEPIFVNAKQYQAILRRRQHRAKLEAQNKL-IKARKPYLHESRHLHALKRARGSGGRF 241 59****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 8.0E-37 | 183 | 244 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.866 | 184 | 244 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 9.3E-27 | 186 | 241 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.5E-22 | 187 | 209 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 189 | 209 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.5E-22 | 218 | 241 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MQEFHSKDSL SSPTTSWGNS VLSNSNVQGS SSSAMTDNNN NNNTLSLTME MMSAHFPGMK 60 QTGFQLQGHD DSSSTLSTGG GESSGDVASL GGHNSNNRYG HNFVTHLSGH KEIAVSPSGS 120 HPKSILSKVS QNSAPPPTIE ASWPLHGNCF MSFPYASQHM VQQHPQIGGL MIPSRILLPH 180 NIPENEPIFV NAKQYQAILR RRQHRAKLEA QNKLIKARKP YLHESRHLHA LKRARGSGGR 240 FLNTKKLQES KSPPFLATSV KFRQREILGV AVGSSGPELT GNNMDMFQQD PQLRFSGYPS 300 NHHVSVLM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-19 | 185 | 253 | 2 | 67 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009117226.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009117205.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-6 isoform X1 | ||||
Refseq | XP_009117212.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-6 isoform X1 | ||||
Refseq | XP_009117216.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-6 isoform X1 | ||||
Refseq | XP_009117220.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-6 isoform X1 | ||||
Refseq | XP_009117226.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-6 isoform X1 | ||||
Swissprot | Q9LVJ7 | 1e-123 | NFYA6_ARATH; Nuclear transcription factor Y subunit A-6 | ||||
TrEMBL | A0A078HND2 | 0.0 | A0A078HND2_BRANA; BnaA01g29650D protein | ||||
TrEMBL | A0A398AUR3 | 0.0 | A0A398AUR3_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DYD1 | 0.0 | M4DYD1_BRARP; Uncharacterized protein | ||||
STRING | Bra021527.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14020.1 | 1e-106 | nuclear factor Y, subunit A6 |
Publications ? help Back to Top | |||
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