PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009117106.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 403aa    MW: 45998.1 Da    PI: 10.436
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009117106.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.34.5e-1614971198
                    HHTT-EE--HHH.HTT..---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 11 lksgrlvlpkkfaeeh..ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                    + s+ l++p  f+++h  g k+e  +t +l++  ++  +W+vk+  + ++    lt+GWkeF+ a++L++gD+v+F+ ++++ f  +v++f 
  XP_009117106.1 14 FHSH-LTIPVAFCSKHveGRKNEHMTTAKLRSdvSDDITWKVKI--EDGR---KLTDGWKEFALAHDLRVGDIVIFRQEKDMAF--HVTMFG 97
                    4555.************85555666778888755677*******..4444...39**********************7776777..888775 PP
2B377.71.3e-24147231590
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      +++++l+ +rl+lpk+f++e+g++++++ +++l++e+grsW+++l+ + + g++++t+GWk+F++a gL++g  ++Fkl++r + 
  XP_009117106.1 147 NVRPSSLRDNRLTLPKRFVRENGLETRCG-EIVLMNEKGRSWTLNLSRKDSCGTMYITGGWKSFCNASGLRTGSLFTFKLIKRGDS 231
                     56789999****************99887.****************87888888**************************998444 PP
3B354.91.5e-17301396298
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ++ +++ +  k++rl +p +f++ hg++ke+  ++ + d++g +W+  l+  + +++r+ l +GWkeF kan ++ g++++ kl+++ ++++v+ 
  XP_009117106.1 301 LTLTLKISDVKNSRLFIPVNFTRLHGINKET--KMAMLDKNGVKWSTSLRSeTSGGDRIRLVGGWKEFFKANCVEIGESIIVKLIWEGDKSCVLE 393
                     55566777788889************99655..8***************885666666****************************988888877 PP

                     EE- CS
              B3  96 vfr 98 
                     +++
  XP_009117106.1 394 FYS 396
                     766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.153399IPR003340B3 DNA binding domain
SuperFamilySSF1019368.44E-194106IPR015300DNA-binding pseudobarrel domain
CDDcd100171.53E-14596No hitNo description
Gene3DG3DSA:2.40.330.103.3E-225110IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.6E-20699IPR003340B3 DNA binding domain
PfamPF023621.9E-111594IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-23136235IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-21141234IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.82143239IPR003340B3 DNA binding domain
CDDcd100175.56E-22143235No hitNo description
SMARTSM010191.4E-28143239IPR003340B3 DNA binding domain
PfamPF023621.3E-22147231IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.1E-17293388IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-19296390IPR015300DNA-binding pseudobarrel domain
PfamPF023622.8E-16300397IPR003340B3 DNA binding domain
SMARTSM010191.6E-20300398IPR003340B3 DNA binding domain
PROSITE profilePS5086313.451300398IPR003340B3 DNA binding domain
CDDcd100173.19E-15300394No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MVNQHFFQPL LPGFHSHLTI PVAFCSKHVE GRKNEHMTTA KLRSDVSDDI TWKVKIEDGR  60
KLTDGWKEFA LAHDLRVGDI VIFRQEKDMA FHVTMFGPSC CEIQYGSRLN KNKLNLSKIQ  120
NKKKVKKKNK KRYIKSSSLD PSCFVNNVRP SSLRDNRLTL PKRFVRENGL ETRCGEIVLM  180
NEKGRSWTLN LSRKDSCGTM YITGGWKSFC NASGLRTGSL FTFKLIKRGD SLVLLKSPSS  240
TKPAEEDCLE AYEREPDSEE KSNQDKKPRL LWKASTSSPS QKKPRSLWKA STSSPSQNLF  300
LTLTLKISDV KNSRLFIPVN FTRLHGINKE TKMAMLDKNG VKWSTSLRSE TSGGDRIRLV  360
GGWKEFFKAN CVEIGESIIV KLIWEGDKSC VLEFYSKVKQ ETK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122130KKVKKKNKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009117106.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117106.10.0PREDICTED: B3 domain-containing protein REM14
TrEMBLA0A397YDE00.0A0A397YDE0_BRACM; Uncharacterized protein
TrEMBLM4CUE10.0M4CUE1_BRARP; Uncharacterized protein
STRINGBra007836.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.11e-101B3 family protein