PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009117103.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 389aa    MW: 43821.8 Da    PI: 9.3027
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009117103.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.84.2e-2350142498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +l+++++l ++ l lpk+f++++ ++ke+ ++++l+d++ rsW + l ++k+s+++++++GW++F+++ng k+g f+vFkl+g +++++++++++
  XP_009117103.1  50 ALVTASNLHKDALDLPKEFTSSNLLEKEC-RKIVLRDRWERSWAMDLAFKKSSDTFYIRQGWRSFCDENGKKAGSFFVFKLVG-NRETPLLSLCS 142
                     57899999999************888877.6***************************************************9.66668998887 PP
2B365.58.1e-21176264999
                     HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      ++ +g l lp +f+++hg++k++   +tl  ++g +W  +l+ + ++gr+ l+kGWk+F+ angLk+gD+++F+l+g++++ ++++++r+
  XP_009117103.1 176 ASFIKGSLHLPLRFMKKHGLDKPR--LITLLGKDGTKWVANLRRESSGGRMRLGKGWKDFALANGLKVGDSFTFELVGKNNTPPMLSLIRT 264
                     55567889*************655..8***************88888888****************************9999999999886 PP
3B349.57.5e-16304382587
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     ++++d  + ++l+lp +f++++g+ k +  ++tl  e+g +W   l    k+g   l+ GWk+F++ang+k+g++++++ + +
  XP_009117103.1 304 TLTPDDVRACQLILPSQFMKANGIYKLG--KITLLGENGTRWLAFL--LSKDGLLALGCGWKDFCEANGVKTGESFTLECICE 382
                     56788899999***********988655..8***************..999999*************************8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-2339143IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-2243145IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.4147143IPR003340B3 DNA binding domain
CDDcd100171.07E-2047142No hitNo description
SMARTSM010194.1E-2948144IPR003340B3 DNA binding domain
PfamPF023622.4E-2150142IPR003340B3 DNA binding domain
PROSITE profilePS5086315.82168265IPR003340B3 DNA binding domain
SMARTSM010191.6E-23168265IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-22169257IPR015300DNA-binding pseudobarrel domain
CDDcd100174.42E-23170256No hitNo description
Gene3DG3DSA:2.40.330.101.7E-20172255IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-19173264IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.0E-17293380IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-18297380IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.126300389IPR003340B3 DNA binding domain
SMARTSM010199.8E-12300387IPR003340B3 DNA binding domain
PfamPF023622.6E-14302381IPR003340B3 DNA binding domain
CDDcd100178.97E-15304380No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MRKKHQYPRT EEEEDDPDNT ELERNKKTKK NNPETEVDSS ISSDHSCFWA LVTASNLHKD  60
ALDLPKEFTS SNLLEKECRK IVLRDRWERS WAMDLAFKKS SDTFYIRQGW RSFCDENGKK  120
AGSFFVFKLV GNRETPLLSL CSTGSTSNRN NKESCVEHST TPPIKSRLMT LTIEHASFIK  180
GSLHLPLRFM KKHGLDKPRL ITLLGKDGTK WVANLRRESS GGRMRLGKGW KDFALANGLK  240
VGDSFTFELV GKNNTPPMLS LIRTESTSDT RQPSSGNKTR EGKQTIEERR DSSSAIKNQV  300
VTLTLTPDDV RACQLILPSQ FMKANGIYKL GKITLLGENG TRWLAFLLSK DGLLALGCGW  360
KDFCEANGVK TGESFTLECI CEANDTTHV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009117103.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117103.20.0PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein REM12
SwissprotP0CAP41e-147REM12_ARATH; B3 domain-containing protein REM12
TrEMBLA0A397YA910.0A0A397YA91_BRACM; Uncharacterized protein
STRINGBra007835.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78281641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.11e-143B3 family protein