PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009117097.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 488aa    MW: 54554.9 Da    PI: 5.3075
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009117097.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.85.7e-06141160626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C+ff++ G C++G++C+ +Hg
  XP_009117097.1 141 CKFFLQ-GRCRFGSSCRLSHG 160
                     ******.*********98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.126135162IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-5135161IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-6136160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-5140161IPR000571Zinc finger, CCCH-type
SMARTSM004431.6E-13296342IPR000467G-patch domain
PfamPF015852.4E-12298340IPR000467G-patch domain
PROSITE profilePS5017412.732298344IPR000467G-patch domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MASEEDKALE DLLDYQLKDQ RESLSAIEEA LASDPSNPDL LSVHEELVGA IKDAEEGLFQ  60
LKRARLLQEA DIVLHGLNNN AAAVKPANEL EPKRKDLDDG SKCRFRHTDG RWYNGRIIGF  120
EGYDSAKISF LTPTSENMMM CKFFLQGRCR FGSSCRLSHG VDVPISSLKN YEETEWKQSM  180
VGSKIWAVSG SKYDVWRVGE LESWDDKLQL GGVVFRDDGS SVKLGSDAMV LSEYADDDGE  240
GEDDEEEDGS DSGSEEESVS SDYDEEFPQG IGILGTTDQR RGGVQNETAI FAKWENHTRG  300
IASKLMANMG YREGMGLGVS GQGRLDPIVA KVLPPKRSLD HALEHIKNGE AKSEKPKKKR  360
SRGGRRKREK KFAEAARAAK QEEESDLFSF INNHEKATGR ESVKKRQNIG PVDRKALVAY  420
EDEVKDLKFQ VKKLEEMVKR NKRDQSFSDA ATRRLKEVQK ALASTLAAQA SASNAVESKE  480
NEKKWLKF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1355370PKKKRSRGGRRKREKK
2364369RRKREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.285540.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009117097.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117097.10.0PREDICTED: zinc finger CCCH domain-containing protein 22
SwissprotQ9SK490.0C3H22_ARATH; Zinc finger CCCH domain-containing protein 22
TrEMBLM4CUD60.0M4CUD6_BRARP; Uncharacterized protein
STRINGBra007830.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94371016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24830.10.0C3H family protein