PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009117096.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 260aa    MW: 29142.4 Da    PI: 10.1762
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009117096.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.61.2e-2164106345
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 
                     i+ ++ rqvtfskRr+g++KKA+EL++LC+ae+ +i++s+  k
  XP_009117096.1  64 IKKETHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVYSPAKK 106
                     8999***********************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.8E-3154113IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.59154114IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.42E-2854131IPR002100Transcription factor, MADS-box
CDDcd002654.25E-3455130No hitNo description
PRINTSPR004042.0E-165676IPR002100Transcription factor, MADS-box
PfamPF003191.4E-2463110IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-167691IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-1691112IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009559Biological Processembryo sac central cell differentiation
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
KLPTMKVDLV IMPHTHTQTC IXTNSXLHQI VQQLKATKAT PLKKTMMSKK KESMGRQRIP  60
MVKIKKETHR QVTFSKRRAG LFKKASELCT LCGAEIGIIV YSPAKKPFSF GHPSVESVLD  120
RYLSRNDLSL AQTKKPQGNT AGNCELNMLL TQTVSEVEEE KKKGQAMAET RKGNAARRLV  180
TSWWEGPVDE MNMVQLQVMK CALEELRKIV VSETNTVPFK EVKEDVFGFL DANKVTAPSY  240
MNTSSGLSNA YHFGYGNGCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-1554127174MEF2C
5f28_B9e-1554127174MEF2C
5f28_C9e-1554127174MEF2C
5f28_D9e-1554127174MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the final stages of embryo sac development. {ECO:0000269|PubMed:18713950}.
UniprotTISSUE SPECIFICITY: Expressed exclusively in the central cell of the female gametophyte and in early endosperm. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009117096.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013604104.11e-168PREDICTED: LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL61, partial
SwissprotQ4PSU41e-124AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A397Y7Y51e-174A0A397Y7Y5_BRACM; Uncharacterized protein
STRINGBo8g099550.11e-156(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-121AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]