PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009117017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 174aa MW: 20386.5 Da PI: 9.6037 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.3 | 1.3e-15 | 11 | 53 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ie ++ +skR++g+lKKAeE+ vLCd ++ +++fs+t k XP_009117017.1 11 IECPKEKSSKYSKRKKGLLKKAEEMAVLCDSDIILLVFSPTSK 53 6666677888*****************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.222 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.3E-23 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.49E-21 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-14 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-15 | 10 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-14 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-14 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MGRKKIELKK IECPKEKSSK YSKRKKGLLK KAEEMAVLCD SDIILLVFSP TSKPNLFYPH 60 SRPLGRILER LSNMSEYERE ERRSYTKKTL MKLFKNKNPN ENHNHSSGRD EVQLQEDDKV 120 IELGEARELL DENTSILRNW QDPHRVDDLA RLTIMEDHLV SILSLIKKVQ IEQG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009117017.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC237304 | 2e-98 | AC237304.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006I08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009117017.1 | 1e-124 | PREDICTED: agamous-like MADS-box protein AGL65 | ||||
TrEMBL | A0A3P5Y6V7 | 1e-119 | A0A3P5Y6V7_BRACM; Uncharacterized protein | ||||
STRING | Bo8g098790.1 | 1e-114 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7330 | 18 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26320.1 | 2e-12 | AGAMOUS-like 33 |