PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116993.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 284aa    MW: 33169.4 Da    PI: 6.0621
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116993.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.32.5e-33271352103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.......XTTSEEEEESXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.......kekiweFkhksFkkg 89 
                     Fl+k++e+++d+++++++sw++ g sfvv+d+++f+ ++Lp yFkh+nf+SFvRQLn+Y ++ +++++++s         + + weF ++ F  g
  XP_009116993.1  27 FLTKTFEMVDDPNTNHIVSWNRGGISFVVWDPHSFSANILPLYFKHNNFSSFVRQLNTYFWRTSTKRSASSYCemgfrkiEAERWEFMNDGFLMG 121
                     9**********************************************************99999988877555777665449************* PP

                     XXXXXXXXXXXXXX CS
    HSF_DNA-bind  90 kkellekikrkkse 103
                     +++ll++ikr++s+
  XP_009116993.1 122 QRDLLKSIKRRTSS 135
                     ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.3E-4523132IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.13E-3023132IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.3E-3424132IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-2827132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.7E-162750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.7E-166577IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.7E-167890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009644Biological Processresponse to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEPSSSSRAW SMPVPMKGLQ EPGPCPFLTK TFEMVDDPNT NHIVSWNRGG ISFVVWDPHS  60
FSANILPLYF KHNNFSSFVR QLNTYFWRTS TKRSASSYCE MGFRKIEAER WEFMNDGFLM  120
GQRDLLKSIK RRTSSSAPPS LHHSQGDPCV ELRQERHVLM MEISRLRQQE QRARGYIQAM  180
EQRINGAEKK QRHMMSFLRR AVQNPALLQQ LLEQQRKELE EASMDQVKPE TVEHVSELEA  240
LALEMQGHGR QRTEEVEKEL DDGFWEELLM NKDEGEEEDN VNTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-202713520123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131LKSIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009116993.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373040.0AC237304.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116993.10.0PREDICTED: heat stress transcription factor A-7b isoform X2
SwissprotQ9M1V51e-147HFA7B_ARATH; Heat stress transcription factor A-7b
TrEMBLA0A078FAR00.0A0A078FAR0_BRANA; BnaA09g40360D protein
TrEMBLM4CU450.0M4CU45_BRARP; Uncharacterized protein
STRINGBra007739.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148361619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G63350.11e-141HSF family protein