PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009116610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | FAR1 | ||||||||
Protein Properties | Length: 251aa MW: 28984.4 Da PI: 5.9681 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 93.7 | 2.3e-29 | 86 | 173 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+++g+ + r++vC+keg+r ++k++ k r+raetr+gC+a++ ++ke++gkw++tk+ +eHnH+l+p XP_009116610.1 86 FYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSKRD--KVIRQRAETRVGCRAMILIRKENSGKWVITKFAKEHNHPLMP 173 9******************************************999..999************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.9E-27 | 86 | 173 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MMMTISVENH NEMGETSGQA MIEQDDENHN EIGESSNQEM PLEQDEKVDP DSIPLAVSDM 60 AEEEVQGGDE PYVGQEFESE AAAHGFYNAY ATKVGFVIRV SKLSRSRHDG SPIGRQLVCN 120 KEGYRLPSKR DKVIRQRAET RVGCRAMILI RKENSGKWVI TKFAKEHNHP LMPGRVRRGC 180 IYDQYPNEHD KIQELMQQLA AEKKRAATYK RHLEMLFEQI EQHNESLTKR IQHIVDNVRD 240 LEQRDHQQNQ V |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.29001 | 2e-83 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009116610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY058089 | 0.0 | AY058089.1 Arabidopsis thaliana AT3g59470/T16L24_20 mRNA, complete cds. | |||
GenBank | AY143081 | 0.0 | AY143081.1 Arabidopsis thaliana At3g59470/T16L24_20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009116607.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 6 isoform X1 | ||||
Refseq | XP_009116608.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 6 isoform X2 | ||||
TrEMBL | A0A3P5YSU9 | 0.0 | A0A3P5YSU9_BRACM; Uncharacterized protein (Fragment) | ||||
STRING | Bo8g093280.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-166 | FAR1 family protein |