PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116356.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 360aa    MW: 41935 Da    PI: 5.1068
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116356.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM44.83.9e-141952971113
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev..diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp G++F+Ptd e+   +Lk+k+ g+++e+  + +e   di+++ P+dLp   + ee++wy+++ +++    g++  r    + W    +d++v+
  XP_009116356.1 195 LPEGLHFRPTDVEMA-IFLKQKALGQPIEACII-PEErhDIFSIPPRDLPG--YPEETHWYYYCWKST----GQQDPR----SLWTRFREDTAVF 277
                     699**********99.9************9655.44437***********4..34789******9854....677777....48*********** PP

             NAM  94 skkgelvglkktLvfykgra 113
                     +++++ v +k+ +++ + ++
  XP_009116356.1 278 DEEENCVAVKRRFTLVEREE 297
                     *99999******99995333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5113810.35644130IPR005491ENT domain
SMARTSM011911.1E-544113IPR005491ENT domain
SuperFamilySSF1586391.7E-645104IPR005491ENT domain
PfamPF037354.8E-1046102IPR005491ENT domain
SMARTSM011910.46140199IPR005491ENT domain
PfamPF037352.1E-5143177IPR005491ENT domain
SuperFamilySSF1019411.14E-17193339IPR003441NAC domain
PROSITE profilePS5100517.976195339IPR003441NAC domain
PfamPF023652.7E-4196319IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MADKKDLDPN HPAEDGTFLC PVKKRAIAER SLTGFGRAHE PEFKKQRLEQ LQRKAYHSVL  60
LASKSESSGT SHKSHIIQKL MNEWNIDQET HISVAHKIDN SDKNATWMIP NSLPNPESLV  120
GKRVHARSPD DEDDDSPTNK KIKLHKQAYD HVLHAFNAES PALSHSRTLI MQHLLDECNN  180
KAHINKIVEP RSRLLPEGLH FRPTDVEMAI FLKQKALGQP IEACIIPEER HDIFSIPPRD  240
LPGYPEETHW YYYCWKSTGQ QDPRSLWTRF REDTAVFDEE ENCVAVKRRF TLVEREEECN  300
DVFLPDEEEP PVEEWFIKEI SLPPSVADSE FVLCHVVLKK REKKKEEEEE YYDEEEEEED
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009116356.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894560.0AC189456.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073D09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116356.10.0PREDICTED: uncharacterized protein LOC103841560 isoform X1
TrEMBLA0A3P5Y5V90.0A0A3P5Y5V9_BRACM; Uncharacterized protein
STRINGBra007254.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1945367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.12e-45NAC family protein