PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009115698.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 249aa    MW: 28388.2 Da    PI: 6.3045
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009115698.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.74.8e-14993195
                    EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                    ffk l     ++sg + +p +f ++h  g +   +k  +l++  s + Wev    +++    +ltkGWkeF +a++L+ gD+v+Fk++g++ f  +v
  XP_009115698.1  9 FFKPL--LPGFQSG-VAIPLDFYSKHiqGAE--INKPWKLRSdASDQIWEVIR--EGR----TLTKGWKEFTEAHDLRIGDIVIFKHEGDMVF--HV 92
                    56666..5666676.99*********86433..4445666654999****988..555....4***********************9999988..76 PP

                    E CS
              B3 95 k 95
                    +
  XP_009115698.1 93 T 93
                    6 PP
2B3651.1e-20130223498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +++++ + k + + lp + + ++g  +++ k+++l +++g+sW+ ++ ++ ++g+y++++GW++F+++n+   gD +vF ++g+ ++++++ v+ 
  XP_009115698.1 130 AEVTATNQKDDKMFLPVEAM-RCGALNQQCKEVKLVNKEGKSWTARFGFSESDGAYYISRGWRKFCRDNRCTNGDLFVFNVVGDGTTTPLLCVCP 223
                     5678899999*********9.7755556779*****************************************************9999*999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-193100IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-194104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.561698IPR003340B3 DNA binding domain
CDDcd100172.18E-14795No hitNo description
SMARTSM010197.3E-19998IPR003340B3 DNA binding domain
PfamPF023627.8E-91790IPR003340B3 DNA binding domain
SuperFamilySSF1019361.24E-16126219IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.408127225IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.8E-16127219IPR015300DNA-binding pseudobarrel domain
CDDcd100176.42E-14127215No hitNo description
SMARTSM010198.4E-17128225IPR003340B3 DNA binding domain
PfamPF023621.5E-18130223IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
METPREPHFF KPLLPGFQSG VAIPLDFYSK HIQGAEINKP WKLRSDASDQ IWEVIREGRT  60
LTKGWKEFTE AHDLRIGDIV IFKHEGDMVF HVTPFGPSCC DIQYTHPHIV KEEADADDAP  120
TFSYDYCFLA EVTATNQKDD KMFLPVEAMR CGALNQQCKE VKLVNKEGKS WTARFGFSES  180
DGAYYISRGW RKFCRDNRCT NGDLFVFNVV GDGTTTPLLC VCPERKECTE LLIKHFSRID  240
GSIASTSRN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009115698.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0116220.0AP011622.1 Brassica rapa subsp. pekinensis DNA, chromosome: Linkage group A5, BAC clone: KBrB038I07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127102.10.0PREDICTED: B3 domain-containing protein REM9-like
RefseqXP_018509655.10.0PREDICTED: B3 domain-containing protein REM9-like
TrEMBLM4F4R30.0M4F4R3_BRARP; Uncharacterized protein
STRINGBra036066.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.15e-60B3 family protein