PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009115396.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 529aa    MW: 59441.4 Da    PI: 8.8746
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009115396.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3438.2e-14251011597
                     -EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  15 rlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      l +p  f+++h  g ++   kt +l++  s ++W v++  ++ +    lt+GW++F+ a++L+ gD+++F+++g++ f  +v++f
  XP_009115396.1  25 YLNIPVAFFSKHveG-SNDHIKTAKLRTdASAKTWLVEM--DGLK----LTDGWEDFAVAHDLRIGDIIIFRHEGKMVF--HVTAF 101
                     589**********63.4444468888775888*******..6666....***********************9998888..87776 PP
2B3696.3e-22163256599
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +++++l+ +rl++pk fa ++g+++ ++k+++l +e+g+sW+++++y+ ++ +++ + GW++F+ +ng+ +g  ++F+l++ +++ +v+++ r+
  XP_009115396.1 163 HVTPSSLSCDRLYVPKGFAMSNGLDNMSGKEIVLLNEEGKSWNLNITYNESGMHTFVRPGWRRFCAENGISQGHHCTFELVR-KSAPPVLRLSRA 256
                     5788999999*********************************************************************998.888888888775 PP
3B357.62.3e-182883652099
                     HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  20 kkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      kf++++g+kk  s +++l++e+g +W+v+l+   +s+r++l+ GWk F++ ng+k+gD ++Fkl++ ++ ++v+ ++++
  XP_009115396.1 288 MKFVTANGMKKGFS-EIILKNEWGGRWSVRLRQYASSNRTYLGPGWKTFCQVNGIKAGDPFMFKLVE-TGDKPVLLLCSS 365
                     38999**9999887.****************99********************************98.666689888875 PP
4B348.71.3e-15434527498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      +++ ++lk++   lp  f++ +g++  +s++++l  ++g ++W v l  +k+ g++ ++kGW+e ++a+g+k+g++++++l++++e+ +v+k++
  XP_009115396.1 434 LTLTQNALKTSVQHLPLGFTRVNGIN--RSRKIMLLGKDGvKKWVVDLLKNKSTGAMRIRKGWRELCDAHGVKVGESFLLELIRDEEAIPVLKFC 526
                     56677888888889******999988..7889****************99999999*****************************9999999998 PP

                     - CS
              B3  98 r 98 
                      
  XP_009115396.1 527 T 527
                     5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-218105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.65E-188106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.54711104IPR003340B3 DNA binding domain
CDDcd100177.06E-1512101No hitNo description
SMARTSM010194.0E-2114104IPR003340B3 DNA binding domain
PfamPF023623.4E-82697IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-22152253IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-21153253IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-17159246No hitNo description
PROSITE profilePS5086314.748159257IPR003340B3 DNA binding domain
SMARTSM010196.8E-28160257IPR003340B3 DNA binding domain
PfamPF023624.5E-20163256IPR003340B3 DNA binding domain
SMARTSM010194.3E-16273366IPR003340B3 DNA binding domain
CDDcd100171.41E-13278364No hitNo description
Gene3DG3DSA:2.40.330.103.5E-15280365IPR015300DNA-binding pseudobarrel domain
PfamPF023625.4E-17288365IPR003340B3 DNA binding domain
SuperFamilySSF1019367.85E-16289365IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.422302365IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-15424527IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-15427526IPR015300DNA-binding pseudobarrel domain
CDDcd100171.76E-12429526No hitNo description
PROSITE profilePS5086312.901431528IPR003340B3 DNA binding domain
SMARTSM010191.1E-20431529IPR003340B3 DNA binding domain
PfamPF023621.7E-14431527IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MAHQSLHSPT NPHFFQPLLP GFHTYLNIPV AFFSKHVEGS NDHIKTAKLR TDASAKTWLV  60
EMDGLKLTDG WEDFAVAHDL RIGDIIIFRH EGKMVFHVTA FGPSLCEFQY TSASSHNIND  120
VSDDDHTNKT VTGNSSGEKR KRVKKNPRTK EESSSDHSHF VAHVTPSSLS CDRLYVPKGF  180
AMSNGLDNMS GKEIVLLNEE GKSWNLNITY NESGMHTFVR PGWRRFCAEN GISQGHHCTF  240
ELVRKSAPPV LRLSRAEHDP KPAPESSLHH SYYVGSASSN SLRIDKLMKF VTANGMKKGF  300
SEIILKNEWG GRWSVRLRQY ASSNRTYLGP GWKTFCQVNG IKAGDPFMFK LVETGDKPVL  360
LLCSSNRGET PLECSDDVNS LSSDTSSGEE SQESEEESLE DDSRSKDCVE MEKRKSSLRC  420
KCSSSYSKHR FVRLTLTQNA LKTSVQHLPL GFTRVNGINR SRKIMLLGKD GVKKWVVDLL  480
KNKSTGAMRI RKGWRELCDA HGVKVGESFL LELIRDEEAI PVLKFCTKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009115396.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115394.10.0PREDICTED: B3 domain-containing protein REM17-like isoform X1
SwissprotQ84WP31e-152REM17_ARATH; B3 domain-containing protein REM17
TrEMBLM4E7E10.0M4E7E1_BRARP; Uncharacterized protein
STRINGBra024696.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-142B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]