PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009115395.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 530aa    MW: 59645.6 Da    PI: 8.8683
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009115395.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3438.2e-14251011597
                     -EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  15 rlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      l +p  f+++h  g ++   kt +l++  s ++W v++  ++ +    lt+GW++F+ a++L+ gD+++F+++g++ f  +v++f
  XP_009115395.1  25 YLNIPVAFFSKHveG-SNDHIKTAKLRTdASAKTWLVEM--DGLK----LTDGWEDFAVAHDLRIGDIIIFRHEGKMVF--HVTAF 101
                     589**********63.4444468888775888*******..6666....***********************9998888..87776 PP
2B3696.4e-22161254599
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +++++l+ +rl++pk fa ++g+++ ++k+++l +e+g+sW+++++y+ ++ +++ + GW++F+ +ng+ +g  ++F+l++ +++ +v+++ r+
  XP_009115395.1 161 HVTPSSLSCDRLYVPKGFAMSNGLDNMSGKEIVLLNEEGKSWNLNITYNESGMHTFVRPGWRRFCAENGISQGHHCTFELVR-KSAPPVLRLSRA 254
                     5788999999*********************************************************************998.888888888775 PP
3B363.33.7e-20277366899
                     -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     s++l+ + l+l  kf++++g+kk  s +++l++e+g +W+v+l+   +s+r++l+ GWk F++ ng+k+gD ++Fkl++ ++ ++v+ ++++
  XP_009115395.1 277 SNSLRIDKLYLQMKFVTANGMKKGFS-EIILKNEWGGRWSVRLRQYASSNRTYLGPGWKTFCQVNGIKAGDPFMFKLVE-TGDKPVLLLCSS 366
                     67788899************999887.****************99********************************98.666689888875 PP
4B348.71.3e-15435528498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      +++ ++lk++   lp  f++ +g++  +s++++l  ++g ++W v l  +k+ g++ ++kGW+e ++a+g+k+g++++++l++++e+ +v+k++
  XP_009115395.1 435 LTLTQNALKTSVQHLPLGFTRVNGIN--RSRKIMLLGKDGvKKWVVDLLKNKSTGAMRIRKGWRELCDAHGVKVGESFLLELIRDEEAIPVLKFC 527
                     56677888888889******999988..7889****************99999999*****************************9999999998 PP

                     - CS
              B3  98 r 98 
                      
  XP_009115395.1 528 T 528
                     5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-218105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.65E-188106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.54711104IPR003340B3 DNA binding domain
CDDcd100176.82E-1512101No hitNo description
SMARTSM010194.0E-2114104IPR003340B3 DNA binding domain
PfamPF023623.4E-82697IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-22150251IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-21151251IPR015300DNA-binding pseudobarrel domain
CDDcd100171.86E-17157244No hitNo description
PROSITE profilePS5086314.748157255IPR003340B3 DNA binding domain
SMARTSM010196.8E-28158255IPR003340B3 DNA binding domain
PfamPF023624.5E-20161254IPR003340B3 DNA binding domain
PROSITE profilePS5086314.931270366IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-17270366IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.9E-20271367IPR003340B3 DNA binding domain
PfamPF023624.6E-19276366IPR003340B3 DNA binding domain
CDDcd100176.44E-15276365No hitNo description
SuperFamilySSF1019363.73E-17281366IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-15425528IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-15428527IPR015300DNA-binding pseudobarrel domain
CDDcd100171.73E-12430527No hitNo description
PROSITE profilePS5086312.901432529IPR003340B3 DNA binding domain
PfamPF023621.7E-14432528IPR003340B3 DNA binding domain
SMARTSM010191.1E-20432530IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MAHQSLHSPT NPHFFQPLLP GFHTYLNIPV AFFSKHVEGS NDHIKTAKLR TDASAKTWLV  60
EMDGLKLTDG WEDFAVAHDL RIGDIIIFRH EGKMVFHVTA FGPSLCEFQY TSASSHNIND  120
VSDDDHTNKT GNSSGEKRKR VKKNPRTKEE SSSDHSHFVA HVTPSSLSCD RLYVPKGFAM  180
SNGLDNMSGK EIVLLNEEGK SWNLNITYNE SGMHTFVRPG WRRFCAENGI SQGHHCTFEL  240
VRKSAPPVLR LSRAEHDPKP APESSLHHSY YVGSASSNSL RIDKLYLQMK FVTANGMKKG  300
FSEIILKNEW GGRWSVRLRQ YASSNRTYLG PGWKTFCQVN GIKAGDPFMF KLVETGDKPV  360
LLLCSSNRGE TPLECSDDVN SLSSDTSSGE ESQESEEESL EDDSRSKDCV EMEKRKSSLR  420
CKCSSSYSKH RFVRLTLTQN ALKTSVQHLP LGFTRVNGIN RSRKIMLLGK DGVKKWVVDL  480
LKNKSTGAMR IRKGWRELCD AHGVKVGESF LLELIRDEEA IPVLKFCTKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009115395.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115395.10.0PREDICTED: B3 domain-containing protein REM17-like isoform X2
SwissprotQ84WP31e-156REM17_ARATH; B3 domain-containing protein REM17
TrEMBLM4E7E10.0M4E7E1_BRARP; Uncharacterized protein
STRINGBra024696.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-146B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]