PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009115393.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 539aa    MW: 60731.3 Da    PI: 7.0701
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009115393.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3383e-12261021597
                     -EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  15 rlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      l +p  f+ +h  g++    kt +l++  s ++W vk+  ++      lt+GW++F+  ++L+ gD+ +F+++g++ f  +v++f
  XP_009115393.1  26 YLNIPVAFFLKHvqGSND-HIKTAKLTTdASAKTWLVKV--DGV----RLTDGWEDFAVGHDLRIGDITIFRHEGEMVF--HVTAF 102
                     588******9**974443.3356666654899*******..555....5***********************9998888..88776 PP
2B359.17.9e-19161245588
                     -..-HHHHTT-EE--HHH.HTT---..--SE.EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeeskt.ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      +++++l+s+rl++p  fa+++g+++ ++k+ ++l +e+grsW++ ++ +k + +++ + GW++F+ +ng+k g   +Fkl++rs
  XP_009115393.1 161 HVSPSSLSSDRLYIPTGFARSNGLDNMSGKEiIVLLNEEGRSWSLDMTCNKVGMQTFVRPGWRRFCAENGMKKGHHYTFKLVRRS 245
                     567899999*************777666555167889**********99999999*************************99853 PP
3B356.74.3e-18277365797
                     .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     ++++l+++ l+l ++f++++g++k  s ++tl++e+g sW + +++   +++++l+ GWk F++ ng+k+ D+++Fkl++ ++ ++v+ ++
  XP_009115393.1 277 SPNSLSTDKLYLQRHFVTANGLEKGLS-EITLKNEWGGSWILGFRHYEPQNHTYLGPGWKTFCQVNGIKAEDSFMFKLVE-TGDKPVLLLC 365
                     577889999**************9887.****************99999999*************************998.5556777776 PP
4B346.37.5e-15442537398
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                         + ++lk++ l+lp  f++ + ++  ++++++l  ++g ++  v l  +k+ g++ ++kGW+eF++a+g+k+g+++ ++l ++ +e+ +v+k
  XP_009115393.1 442 RLSFTQSALKTSVLYLPLAFTRMNCIN--KPIKIMLLGKDGvKKQVVDLLKNKSTGAMRFGKGWREFCDAHGVKVGESFQLELFREdEEAIPVLK 534
                     5567889999999***********877..6779********6666677777888888*************************9988799989998 PP

                     EE- CS
              B3  96 vfr 98 
                     ++ 
  XP_009115393.1 535 FCT 537
                     886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-209107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-189112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.99712105IPR003340B3 DNA binding domain
CDDcd100175.13E-1313102No hitNo description
SMARTSM010193.7E-1715105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-18150245IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-16153251IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.029157256IPR003340B3 DNA binding domain
CDDcd100177.36E-16158252No hitNo description
SMARTSM010191.6E-20158256IPR003340B3 DNA binding domain
PfamPF023624.5E-17160251IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.9E-17264367IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-16269368IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.338271367IPR003340B3 DNA binding domain
SMARTSM010192.0E-18272368IPR003340B3 DNA binding domain
PfamPF023627.8E-17276366IPR003340B3 DNA binding domain
CDDcd100172.60E-12279365No hitNo description
Gene3DG3DSA:2.40.330.101.0E-12436537IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.45E-15436536IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.082440538IPR003340B3 DNA binding domain
PfamPF023622.2E-13440537IPR003340B3 DNA binding domain
SMARTSM010192.8E-19440539IPR003340B3 DNA binding domain
CDDcd100171.32E-12455528No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MAYDQSLHSP NNPHFFQPLL PGFHTYLNIP VAFFLKHVQG SNDHIKTAKL TTDASAKTWL  60
VKVDGVRLTD GWEDFAVGHD LRIGDITIFR HEGEMVFHVT AFGPSCCDIQ YTSESSHNIN  120
DDSQDQTNNA GNSSGEKRKR VKKNPRTKED SSSDHSQFVA HVSPSSLSSD RLYIPTGFAR  180
SNGLDNMSGK EIIVLLNEEG RSWSLDMTCN KVGMQTFVRP GWRRFCAENG MKKGHHYTFK  240
LVRRSAPLII RLSHAEHEPE PATESSLNHS YYVGSVSPNS LSTDKLYLQR HFVTANGLEK  300
GLSEITLKNE WGGSWILGFR HYEPQNHTYL GPGWKTFCQV NGIKAEDSFM FKLVETGDKP  360
VLLLCTSNRG KTPLECSEDR DDVNSLSSDT SSEDDSKEES QESDKESIED ADRSQQCIVM  420
EKENNSLRCI CSSPYSKHRF VRLSFTQSAL KTSVLYLPLA FTRMNCINKP IKIMLLGKDG  480
VKKQVVDLLK NKSTGAMRFG KGWREFCDAH GVKVGESFQL ELFREDEEAI PVLKFCTTT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009115393.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115393.10.0PREDICTED: B3 domain-containing protein REM17-like isoform X2
SwissprotQ84WP31e-154REM17_ARATH; B3 domain-containing protein REM17
TrEMBLM4E7E20.0M4E7E2_BRARP; Uncharacterized protein
STRINGBra024697.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-151B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]