PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009115385.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 452aa    MW: 50874.8 Da    PI: 8.7558
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009115385.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00074394416123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C ++F++   L  H r+H
  XP_009115385.1 394 HECPICFRVFKSGQALGGHKRSH 416
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.2E-5632IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.74E-7731No hitNo description
SMARTSM003550.32931IPR015880Zinc finger, C2H2-like
PfamPF139123.3E-4932IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.762936IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576675.74E-784111No hitNo description
SMARTSM003550.07189111IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78389116IPR007087Zinc finger, C2H2
PfamPF139120.001491113IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.8E-491113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
SMARTSM003550.14394416IPR015880Zinc finger, C2H2-like
PfamPF139123.9E-10394416IPR007087Zinc finger, C2H2
PROSITE profilePS501578.974394416IPR007087Zinc finger, C2H2
PROSITE patternPS000280396416IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MEQFKERKFV CKFCSKRFAC GKSLGGHIRT HMNKENSADS DEDEHNKFRI DENGGQASYG  60
LRENPKKNKR FVVQRDMMAL KHQHQQQLLY CRECGKGFTS SKALCGHMAC HSEREKIVMD  120
SQFDTEASSS PIRRRSKRAV KHHHHHKDDA FVDGGSIMDQ SDSSASSDDD EIEPEQEETA  180
LSLMMLSRDS SFKKAHNLVV NSLAESSDNN SVILETKSSS GEQLKILNVK NVEEFCKKDK  240
LGGVDNGDVL YDSDNSDSGY FRNGPKKLDS DVSVDGFLKN NAFSNKSAMG FNSYTPKQEK  300
SLNRFRNEWS GSGSGSGRSS TKYDLRQSKR GFPCYGRKKI KYEFTESVYE SGDQLSLETD  360
SCADTNRSIK KIHNSKPPMV KKPSGGVKKK SKGHECPICF RVFKSGQALG GHKRSHFIGS  420
QDHRTLVIQQ HHQVAHDMHT LIDLNLPAPI DE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009115385.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894290.0AC189429.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB066M16, complete sequence.
GenBankHM5609660.0HM560966.1 Brassica rapa subsp. chinensis C2H2 zinc finger transcription factor (MF20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115384.10.0PREDICTED: zinc finger protein ZAT4
RefseqXP_009115385.10.0PREDICTED: zinc finger protein ZAT4
TrEMBLE0A8P20.0E0A8P2_BRARC; C2H2 zinc finger transcription factor
TrEMBLM4E7E90.0M4E7E9_BRARP; Uncharacterized protein
STRINGBra024704.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.10.0C2H2-like zinc finger protein