PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009115377.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 325aa    MW: 35174.6 Da    PI: 8.8316
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009115377.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.6e-05527123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C+k F++  +L  Hir H
  XP_009115377.1  5 FVCKFCNKKFPSGKSLGGHIRIH 27
                    89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-5228IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.76E-8327No hitNo description
PROSITE profilePS5015711.094532IPR007087Zinc finger, C2H2
PfamPF139123.7E-6527IPR007087Zinc finger, C2H2
SMARTSM003550.0065527IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SuperFamilySSF576672.76E-8266293No hitNo description
PfamPF139122.1E-10271293IPR007087Zinc finger, C2H2
SMARTSM003550.51271293IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.162271298IPR007087Zinc finger, C2H2
PROSITE patternPS000280273293IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEKEFVCKFC NKKFPSGKSL GGHIRIHSPQ SSVHSDGFIG KNNNSKKRLV DQRALASHNY  60
EGKKMEMDTQ SASETTTTTS SGPTTMIKRS KKQSSSESFS TVSWSSDPGI DQGSKDLMFL  120
HLGRKDFNLP VNSLVPDSSE NNSEILETKS SSGELLKTPH KVAVGDDSDD SDDNGSSDSD  180
YFMSGPKKSD VSVGGSLRNT GVGSGFNSFK NGDELGVKER GSKHELGKSK RVSPSYGSDS  240
YEDKKNSKFH RSSDGGMVKK ASGGDKNSKG HECPVCFKVY SSGQALGGHK RSHTIANQAQ  300
QRAKRKAADM QFGLYLPAEE DSDDD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009115377.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894290.0AC189429.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB066M16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115377.10.0PREDICTED: zinc finger protein ZAT1
TrEMBLM4E7F10.0M4E7F1_BRARP; Uncharacterized protein
STRINGBra024706.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2035156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.14e-51C2H2-like zinc finger protein