PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009115328.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 240aa    MW: 26924.3 Da    PI: 4.8644
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009115328.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.91.9e-1166108248
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 
                     +  GVr +  +g+W+AeIr p +   +++++lg++ t eeA ka+  
  XP_009115328.1  66 KPVGVRLRQ-SGKWAAEIRNPLT---KTKVWLGTYATLEEAGKAYAD 108
                     678***999.7*********743...4*****************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.6E-391228IPR017392AP2/ERF transcription factor ERF/PTI6
PfamPF008474.4E-766106IPR001471AP2/ERF domain
SMARTSM003805.2E-1066129IPR001471AP2/ERF domain
PROSITE profilePS5103215.35666123IPR001471AP2/ERF domain
CDDcd000181.11E-1568106No hitNo description
SuperFamilySSF541713.99E-1268117IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.6E-1669121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MKKSVRVRKV RIIVSDPYAT DDSSSDEWFE CKPPKVKRIV HEINLPFQLS ESSQYHKNSR  60
RMQLNKPVGV RLRQSGKWAA EIRNPLTKTK VWLGTYATLE EAGKAYADKK VEFDASVASA  120
NSQCLRSAAS KEKVSLRKDV AASGDLAKEG FDLSELEIPD LSFLAAEEKS GAKAAGEMDF  180
DYFFKDEDYD HLFDDFSVVD NVNNVSLPSE LPDCDFTDVE LEHDDMKFAF AAPPLNIACP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.109840.0bud
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009115328.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115324.11e-178PREDICTED: ethylene-responsive transcription factor ERF116
RefseqXP_009115325.11e-178PREDICTED: ethylene-responsive transcription factor ERF116
RefseqXP_009115326.11e-178PREDICTED: ethylene-responsive transcription factor ERF116
RefseqXP_009115327.11e-178PREDICTED: ethylene-responsive transcription factor ERF116
RefseqXP_009115328.11e-178PREDICTED: ethylene-responsive transcription factor ERF116
SwissprotQ8GW179e-59EF116_ARATH; Ethylene-responsive transcription factor ERF116
TrEMBLM4E7I81e-176M4E7I8_BRARP; Uncharacterized protein
STRINGBra024743.1-P1e-177(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25470.22e-45ERF family protein