PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009115286.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 227aa MW: 26672 Da PI: 8.0077 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.4 | 2.1e-07 | 29 | 54 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ Cr ++ +G C +G++C F+H++ XP_009115286.1 29 GQSSCRSYLHSGLCVRGSNCLFNHPR 54 5677********************96 PP | |||||||
2 | zf-CCCH | 29.2 | 1.6e-09 | 53 | 75 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+ff+r G+Ck G+ CkF H++ XP_009115286.1 53 PRCKFFLR-GFCKDGSACKFLHSR 75 68******.*************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 7.629 | 27 | 48 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.088 | 27 | 54 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.131 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-7 | 53 | 75 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.28E-6 | 54 | 74 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2 | 55 | 75 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-5 | 55 | 76 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MATNLDRERS EPKTTSDERI PSDYPVRPGQ SSCRSYLHSG LCVRGSNCLF NHPRCKFFLR 60 GFCKDGSACK FLHSRDNEAP MRQALSSNEK NFHPKVMEKE NHKVDAHGQE YNLQVGRKRE 120 SIEWQTREAQ EMGRRKSKAF LEEQRVTVKE TETRDLILFF YCHCKVEKTT DKIDEKRQRD 180 VEKLEIEAEE ISEEQRLKVE KNGGRLVRDL SQVFEFESSN IFSQLLF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009115286.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018509916.1 | 1e-168 | PREDICTED: putative zinc finger CCCH domain-containing protein 10 | ||||
TrEMBL | A0A0D3CEJ6 | 6e-39 | A0A0D3CEJ6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FI98 | 6e-39 | A0A3P6FI98_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g059850.1 | 1e-39 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18796 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 4e-10 | zinc finger protein 1 |