PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009115284.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 186aa MW: 20768.6 Da PI: 8.7637 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45.9 | 7.2e-15 | 20 | 63 | 6 | 49 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + r +tfskR+ngi K +ELS+LC+a+v +i+s +gk +++ XP_009115284.1 20 NEDRIITFSKRKNGIYTKLSELSILCGADVGFLIYSGSGKPFTF 63 567899**********************************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 7.85E-23 | 7 | 81 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.175 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.3E-20 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-15 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-18 | 17 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-15 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-15 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MGGKKTRGRQ KIDIKKVTKN EDRIITFSKR KNGIYTKLSE LSILCGADVG FLIYSGSGKP 60 FTFGSPSFDD VAQRFLHGNH HSGIINGEGN SSSSSLIVDA HKKVKMDEFC KNLNNLMEIK 120 TAAEEEKLKM AEPAYAPSLP VKSTDEEEKQ LLRRYEEYYE ELCEVAAAKI RGRYDVPASS 180 SFPQHG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009115284.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013658470.1 | 1e-119 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | M4EU65 | 1e-135 | M4EU65_BRARP; Uncharacterized protein | ||||
STRING | Bra032347.1-P | 1e-136 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4676 | 13 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29962.1 | 3e-43 | AGAMOUS-like 64 |