PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009115228.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 349aa    MW: 41195.2 Da    PI: 6.9846
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009115228.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.21.6e-0992117126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++C+ +++tG C +G++C F+H+
  XP_009115228.1  92 PGERICPSYLQTGLCEHGSNCLFNHP 117
                     5789*********************9 PP
2zf-CCCH25.72e-08118137525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                      C+ff+r G+Ck G+ CkF+H
  XP_009115228.1 118 TCKFFRR-GFCKDGSDCKFIH 137
                     6**9999.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.001691118IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.27792112IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-793117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.16E-594118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-495116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.033113140IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-6118137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5118138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4119139IPR000571Zinc finger, CCCH-type
SMARTSM003562119139IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEETKERNMD LRSSKSDVRT HRRHKRDPRI CAEKRDNKDS GLRINESHQT HDHKESYADI  60
QRARDVEMQQ QGRHGSESKN KVKRNSGYQV HPGERICPSY LQTGLCEHGS NCLFNHPTCK  120
FFRRGFCKDG SDCKFIHAKN NEALRLPNTM RQPLSHPKDR DGADTMRQRD NTEWQRGEAQ  180
ENVHEHRQRD ITDCQRYYEM GRRDAQEIVV KQHRQRDITE SLRYFEMGRR DAQVIVQQHR  240
QREASGRQRY LEEEKSEEAQ ENDQEQRLMV TTLDGRFDER RHETESSSMA EKREELFTSL  300
QSVFKDVIDD IAAGYERVGT EHGEGNVGRQ RVEAEEIVQE QSNRDGDVL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009115228.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018510317.10.0PREDICTED: putative zinc finger CCCH domain-containing protein 9
TrEMBLA0A078IEA11e-152A0A078IEA1_BRANA; BnaA09g26750D protein
STRINGBra032326.1-P1e-149(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1879646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29600.16e-16C3H family protein