PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009114777.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 252aa    MW: 28637.6 Da    PI: 9.3727
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009114777.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.23.7e-1228691050
                    HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
          SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                    ++++  R+++il KA ELS+LCd  ++vi +   g+l ++++
  XP_009114777.1 28 STSLFERQETILRKAGELSTLCDSLICVIHYDRLGNLvKTWP 69
                    699****************************99887537776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500668.8441164IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-102794IPR002100Transcription factor, MADS-box
PfamPF003196.7E-63064IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDSSSSSRNN KKVNKFSVRK QTLFKKPSTS LFERQETILR KAGELSTLCD SLICVIHYDR  60
LGNLVKTWPE DESQVQGIAE RYSKLTHEEK QKKSTNLSKF CNKKMHDEKK RFPIKFSQKV  120
QELEGSLVDK LQLLQDILLR EDQSIMSEQN HNFPNYSSVP DHQQQSVSAT STEQDMSRGD  180
VYNSAAATDQ LLNHQRLCLG DKASTLALAT TMSLLLYLRS KLTLDTTTTV SIIRKASTLG  240
MTSTISVHDV MW
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009114777.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013605329.11e-137PREDICTED: agamous-like MADS-box protein AGL93
TrEMBLA0A3P5YEN41e-141A0A3P5YEN4_BRACM; Uncharacterized protein
TrEMBLM4EGV41e-141M4EGV4_BRARP; Uncharacterized protein
STRINGBra028019.1-P1e-142(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11759729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27580.11e-31AGAMOUS-like 89