PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009114498.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 289aa MW: 32518.8 Da PI: 4.6539

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009114498.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.8	1.2e-05	172	206	16	55
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + ++ L++l+ + +K + a++L +AveYIk Lq XP_009114498.1 172 LGDRVTALQQLVSPF-----GKTDTASVLNEAVEYIKFLQ 206 556666677777776.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.896	156	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.19E-11	166	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.96E-6	166	209	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.5E-9	170	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MTGEFEMAGT WWSSPINTAT SVFSGYSLPR PTESSLDITD FGWQNFDNKT NDHNDDFINM 60 HNSFFEGLFD PNEQLLSDSW PKTTISAKSE LLENFPFLDN ILLIDSEAHD QIKDHKSLEQ 120 TTQDCMNLTS KRSERTEELK ENNDENSPRL LKRARMDTLS PLPSFKVRKE KLGDRVTALQ 180 QLVSPFGKTD TASVLNEAVE YIKFLQEQVT VLSNPDQNTR GSVQQQQCSD KKSINSSQEE 240 EECSSRRHLD LASRGLCLMP ISASYPVAAA AASAAEMNXH LTSGILHSR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Differentiating root endodermis. {ECO:0000269\|PubMed:16581911}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009114498.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009114498.2	0.0	PREDICTED: transcription factor bHLH114
Swissprot	Q9M0X8	1e-143	BH114_ARATH; Transcription factor bHLH114
TrEMBL	A0A397XVL3	0.0	A0A397XVL3_BRACM; Uncharacterized protein
STRING	Bo9g076250.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14428	17	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G05170.1	1e-108	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]