PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009114320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 825aa MW: 91888.2 Da PI: 5.2749 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.9 | 2.3e-20 | 113 | 168 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF++n++p ++r++L+++lgL+ rqVk+WFqNrR+++k XP_009114320.1 113 KKRYHRHTDRQIQEMEALFKENPHPEDKQRQRLSHELGLKPRQVKFWFQNRRTQMK 168 688899***********************************************998 PP | |||||||
2 | START | 147.4 | 1.3e-46 | 325 | 551 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT CS START 2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdet 75 +a ++ qel k+ + eep+Wv +n++e+++ ++ ea++a +vv+m++ +lv+ +l+ +W+e+ XP_009114320.1 325 FAVSCVQELTKMCDTEEPLWVNKKsdkiggetLCLNEEEYMR------LfpwpmeknnnngdFRREASKANAVVIMNSITLVNAFLNAD-KWSEM 412 67899****************999555554443345555555......155555677889999**************************.***** PP -S....EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECT CS START 76 la....kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksn 159 + +++t++ issg g l lm+aelq+lsplvp R+ +f+Ry +q ++ g w+ivd +ds ++++ +++ + pSg++i++++n XP_009114320.1 413 FCsivaRVKTVQIISSGvsgasGSLMLMYAELQVLSPLVPtREAYFLRYVEQnSENGNWAIVDFPIDSFHDQNSPHEYK---RKPSGCIIQDMPN 504 *99999*************************************************************999998445555...5************ PP CEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 160 ghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 g+skv wvehv++ +r++h+ + vksg+a+ga++wv l+rqce+ XP_009114320.1 505 GYSKVKWVEHVEVVERHVHETFAEYVKSGMAFGASRWVDVLERQCER 551 *********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.11E-19 | 104 | 171 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.5E-21 | 107 | 176 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.702 | 110 | 170 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.8E-18 | 111 | 174 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.94E-19 | 113 | 171 | No hit | No description |
Pfam | PF00046 | 7.2E-18 | 113 | 168 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 145 | 168 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 41.829 | 315 | 554 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.79E-28 | 316 | 553 | No hit | No description |
CDD | cd08875 | 4.01E-101 | 319 | 550 | No hit | No description |
SMART | SM00234 | 1.2E-26 | 324 | 551 | IPR002913 | START domain |
Pfam | PF01852 | 5.1E-39 | 325 | 551 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.71E-13 | 581 | 802 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 825 aa Download sequence Send to blast |
MLTIGEESVM TSDNRFASPP PPASSSPATI QNPNFNFIPF NSFSSIIPKE EHGMMSMSMM 60 MMMGDEAVEE MMENGSMGGS FGSGSEQAED PKSGTEFDVN ELRDDEQPPP AKKKRYHRHT 120 DRQIQEMEAL FKENPHPEDK QRQRLSHELG LKPRQVKFWF QNRRTQMKAQ QDRAENVMLR 180 ADNDNLKLEN SQLQAELRCL SCPSCGGPTV LGDIPFNELH IENCRLREEL DRLCCIASRY 240 TDRPMQPMPP SQPLINPASE LPHHQPSLEL DISAYAGNYP DHPCSDLMSL PPQDSACFFP 300 TQTINNSSNN NMLLADEEKV MAMEFAVSCV QELTKMCDTE EPLWVNKKSD KIGGETLCLN 360 EEEYMRLFPW PMEKNNNNGD FRREASKANA VVIMNSITLV NAFLNADKWS EMFCSIVARV 420 KTVQIISSGV SGASGSLMLM YAELQVLSPL VPTREAYFLR YVEQNSENGN WAIVDFPIDS 480 FHDQNSPHEY KRKPSGCIIQ DMPNGYSKVK WVEHVEVVER HVHETFAEYV KSGMAFGASR 540 WVDVLERQCE RMASLMARNI TDLGVIRSAE ARRNMMRLSQ RMMKTFCVNI STSYGQSWTA 600 LSETAKDTVR ITTRKVCEPG QPTGVVLVAV STTWLPFSHF KVFDLLRDQH HHSLLEVLFS 660 GNSSHEVAHI ANGSHPGNCI SLLRVNVASN SWHNVELMLQ ESCIDNSGGL IVYSTVGVDS 720 IQHVMNGEDP SNVPVLPLGF SVVPVNPPGE VEGISVNSIP PPSCLLTVGI QVLASNVPTA 780 KPNLSTVTTI NNHLCSIVNQ ITSVLSSTIS PTIASSAAAA KQDVI |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in the L1 of apical inflorescence meristems, early flower primordia, carpel and stamen filament epidermis, ovule primordia, nucellus and chalaze. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009114320.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB013394 | 1e-144 | AB013394.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQD22. | |||
GenBank | CP002688 | 1e-144 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009114317.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG5 | ||||
Refseq | XP_009114318.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG5 | ||||
Refseq | XP_009114319.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG5 | ||||
Refseq | XP_009114320.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG5 | ||||
Refseq | XP_018510071.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG5 | ||||
Swissprot | Q9FJS2 | 0.0 | HDG5_ARATH; Homeobox-leucine zipper protein HDG5 | ||||
TrEMBL | M4DLY8 | 0.0 | M4DLY8_BRARP; Uncharacterized protein | ||||
STRING | Bra017519.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | homeobox-7 |
Publications ? help Back to Top | |||
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