PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009114292.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 457aa    MW: 51062.6 Da    PI: 6.0414
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009114292.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.79.2e-15741135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  XP_009114292.1  7 CCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                    99**************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.8E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-11546No hitNo description
CDDcd002021.05E-15654No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF003201.7E-12741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-11741IPR013088Zinc finger, NHR/GATA-type
PfamPF139199.2E-7235324IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MGKQGPCCHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHS RSEGDNEIED  60
HRVQKTMMIN GMPVNKKILK RKSSHQENFN NGFKKRSLEE EASNRSSSGS VVSNSESCDQ  120
SNAWETIFPC KKRTCVVVGR PKAASSVEKL TKDLFSILQE QQQSSCLSGC SEEDLLFENG  180
SPMVIGHGSV LMRDEESEAS SLLVESSKSV SVRSVGFEVN RVQRSLNFGG NDIKQEQHKT  240
KPQVLGRPGL PLCNIDLKDV FNFDEFIEKF TEEEQCKLMK LLPGADSVDL PDSLRSMFEC  300
SQFKDNFSLF QQLVAYGVFE TLSSSSSSKP EEFKKLAKLA LSDPNKSHLL ESYCMLKRKG  360
SEDSVTTSER PSESLNQNFS ETRGVMKSPK EVTKMRPKHI GTEEIVENSV YSFNNHMRYG  420
GPMVFSCEDN DICDEEDVLV DVPSNGSFPQ AELLHMI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009114292.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834930.0AC183493.1 Brassica oleracea Contig B, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114295.10.0PREDICTED: GATA transcription factor 27-like isoform X2
SwissprotQ5PP380.0GAT27_ARATH; GATA transcription factor 27
TrEMBLM4DLX00.0M4DLX0_BRARP; Uncharacterized protein
STRINGBra017501.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.10.0GATA transcription factor 27