PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009114291.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 459aa MW: 51319.8 Da PI: 5.874 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 45.6 | 9.3e-15 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ XP_009114291.1 7 CCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 99**************88888***********997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 6.8E-10 | 1 | 55 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.55E-11 | 5 | 46 | No hit | No description |
CDD | cd00202 | 9.96E-16 | 6 | 54 | No hit | No description |
Pfam | PF00320 | 1.7E-12 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.2 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.2E-11 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF13919 | 9.2E-7 | 235 | 324 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 459 aa Download sequence Send to blast |
MGKQGPCCHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHS RSEGDNEIED 60 HRVQKTMMIN GMPVNKKILK RKSSHQENFN NGFKKRSLEE EASNRSSSGS VVSNSESCDQ 120 SNAWETIFPC KKRTCVVVGR PKAASSVEKL TKDLFSILQE QQQSSCLSGC SEEDLLFENG 180 SPMVIGHGSV LMRDEESEAS SLLVESSKSV SVRSVGFEVN RVQRSLNFGG NDIKQEQHKT 240 KPQVLGRPGL PLCNIDLKDV FNFDEFIEKF TEEEQCKLMK LLPGADSVDL PDSLRSMFEC 300 SQFKDNFSLF QQLVAYGVFE TLSSSSSSKP EEFKKLAKLA LSDPNKSHLL ESYCMLKEQR 360 KGSEDSVTTS ERPSESLNQN FSETRGVMKS PKEVTKMRPK HIGTEEIVEN SVYSFNNHMR 420 YGGPMVFSCE DNDICDEEDV LVDVPSNGSF PQAELLHMI |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009114291.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC183493 | 0.0 | AC183493.1 Brassica oleracea Contig B, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009114291.1 | 0.0 | PREDICTED: GATA transcription factor 27-like | ||||
Refseq | XP_009114293.1 | 0.0 | PREDICTED: GATA transcription factor 27-like isoform X1 | ||||
Refseq | XP_018510074.1 | 0.0 | PREDICTED: GATA transcription factor 27-like | ||||
Swissprot | Q5PP38 | 0.0 | GAT27_ARATH; GATA transcription factor 27 | ||||
TrEMBL | M4DLX0 | 0.0 | M4DLX0_BRARP; Uncharacterized protein | ||||
STRING | Bra017501.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1606 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47140.1 | 0.0 | GATA transcription factor 27 |