PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009114239.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 160aa MW: 18541.4 Da PI: 9.7651 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60 | 3.9e-19 | 23 | 76 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++tkeq + Le+ F++n++++ +++e LA++l L rq+ vWFqNrRa+ k XP_009114239.1 23 KKLRLTKEQSRLLEDSFRQNHTLNPKQKETLAEHLMLRPRQIEVWFQNRRARSK 76 66789***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 119.9 | 1.3e-38 | 23 | 110 | 2 | 89 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 kk+rl+keq++lLE+sF+++++L+p++K++la++L l+prq++vWFqnrRAR k+kq+E+++++Lkr++ +l+e+n+rL+ eveeLr+ XP_009114239.1 23 KKLRLTKEQSRLLEDSFRQNHTLNPKQKETLAEHLMLRPRQIEVWFQNRRARSKMKQTEMECAYLKRWFGSLTEQNNRLHIEVEELRA 110 9*************************************************************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.94E-18 | 12 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.342 | 18 | 78 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.9E-15 | 20 | 82 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.1E-16 | 23 | 76 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-17 | 23 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.15E-14 | 23 | 76 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 53 | 76 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 2.7E-18 | 78 | 121 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 2.5E-9 | 78 | 112 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MNRLPSSHED EELSHGGSAP PCKKLRLTKE QSRLLEDSFR QNHTLNPKQK ETLAEHLMLR 60 PRQIEVWFQN RRARSKMKQT EMECAYLKRW FGSLTEQNNR LHIEVEELRA MKVGSSTMTS 120 TSSLTMCPRC ERVTTAAIPS MAVVDVPAKK LMIPPQEREH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 70 | 78 | RRARSKMKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009114239.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353448 | 1e-126 | AK353448.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-G16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018455112.1 | 1e-104 | PREDICTED: homeobox-leucine zipper protein ATHB-17-like | ||||
Refseq | XP_018455149.1 | 1e-104 | PREDICTED: homeobox-leucine zipper protein ATHB-17-like | ||||
Swissprot | Q8S9N6 | 1e-87 | ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17 | ||||
TrEMBL | M4DLS0 | 1e-115 | M4DLS0_BRARP; Uncharacterized protein | ||||
STRING | Bra017451.1-P | 1e-115 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 5e-83 | homeobox-leucine zipper protein 17 |
Publications ? help Back to Top | |||
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