PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009113932.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 377aa MW: 41596.4 Da PI: 8.1881 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.6 | 7.6e-07 | 100 | 123 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 e C+ f+ +G C++Gd C FaHg XP_009113932.1 100 GEVCPEFRNGGDCSRGDMCGFAHG 123 589********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 2.75E-5 | 96 | 127 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0019 | 97 | 124 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.042 | 98 | 125 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.0E-6 | 99 | 125 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-4 | 101 | 123 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3 | 133 | 156 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000932 | Cellular Component | cytoplasmic mRNA processing body | ||||
GO:0010494 | Cellular Component | cytoplasmic stress granule | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MDVEHHNSGH IGRPTVDIPP RKLLSSAVSP SSPCPEDKAQ KDCCYDSDSD DPYAGDHFRM 60 YEFKIRRCTR SRSHDWTDCP FAHPGEKARR RDPRRYHYTG EVCPEFRNGG DCSRGDMCGF 120 AHGIFECWLH PSRYRTEACK DGKHCKRKIC FFAHSPRQLR VLPPSENFVS GGGGSAASSP 180 ASVLSYKNNR CCVFCSHSPT STLLDLSRSP TSSPPLSPAN KSAVFSRMSR RHSALAHKQV 240 LHELINSLDS FSFKEALAAA SSSSPVTMPV TTGETMLASS NRSNNHRLPP WIDVGDRDLQ 300 LQQSSFKYAF SPSSTPSYLN GQLPPPSFFS DEFTPRGGRL SDFTVAATAA AEARGKNSFE 360 VGHSGDLDLG WVNDLLT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009113932.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009113932.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 61 | ||||
Swissprot | Q9FKW2 | 1e-177 | C3H61_ARATH; Zinc finger CCCH domain-containing protein 61 | ||||
TrEMBL | A0A397XUR9 | 0.0 | A0A397XUR9_BRACM; Uncharacterized protein | ||||
TrEMBL | M4EFH5 | 0.0 | M4EFH5_BRARP; Uncharacterized protein | ||||
STRING | Bra027537.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2987 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44260.1 | 1e-159 | C3H family protein |