PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009113624.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 264aa    MW: 30397.1 Da    PI: 4.6966
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009113624.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.56.2e-10291101399
                     TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +++ ++p +f+++ g+       ++l  ++++sW+  l  ++ +++ ++ ++ W eFv++n L++ D+++F++++++ f   v++f+k
  XP_009113624.1  29 KSMRIFPEEFVRSAGEA--FVHRVVLCVLWNNSWQCWL--QQDKNGlFMVEEDWDEFVDDNLLDTDDILLFTHQDTMYF--QVRIFKK 110
                     45567899999999744..55579**************..6666666999**********************9887888..9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-1412111IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-1313112IPR015300DNA-binding pseudobarrel domain
CDDcd100174.87E-1114109No hitNo description
SMARTSM010191.3E-1016111IPR003340B3 DNA binding domain
PROSITE profilePS5086310.67317111IPR003340B3 DNA binding domain
PfamPF023621.4E-728110IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-7163256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-6164257IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.132227263IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MLPESENREN LSSPSFIKSL SLGQNWKSKS MRIFPEEFVR SAGEAFVHRV VLCVLWNNSW  60
QCWLQQDKNG LFMVEEDWDE FVDDNLLDTD DILLFTHQDT MYFQVRIFKK DGKEITSVPL  120
EGEPETQPFH QETTPAYASA NGGTSSRARK GYAHVENPKR YLLNPRNPYF EKTLTKTNTV  180
LYVNTWVIEE YDLEFSPPNT HMHFLLPDGE TLDGYTKDYG GSHSFLGWAA VCERCNLRTG  240
DTVVCELELS GRVVVAVRVH LLDE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009113624.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018510844.10.0PREDICTED: B3 domain-containing protein At5g25470-like isoform X1
SwissprotQ680D92e-94Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLM4DXN80.0M4DXN8_BRARP; Uncharacterized protein
STRINGBra021284.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25475.32e-90B3 family protein