PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009112576.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 342aa    MW: 39171.2 Da    PI: 9.4392
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009112576.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.21.2e-192368651
                    HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +s +  +++kR+ +++KKAeELS+LC++ev+vi ++s+g l+++++
  XP_009112576.1 23 SSLKAASLAKRQVTVFKKAEELSILCGVEVSVICYGSDGALRTWPK 68
                    677889**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.1E-4469IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-1624101IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.7182670IPR002100Transcription factor, MADS-box
CDDcd002661.18E-142691No hitNo description
PfamPF003195.8E-122866IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-53247IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-54768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSSSLSKTTK VSQFRPTLFQ KASSLKAASL AKRQVTVFKK AEELSILCGV EVSVICYGSD  60
GALRTWPKDR EKVKDMAVRY SQLSEVKRRI KQWDLNKFLE EVNKDPKKKN KKKKVKLESS  120
YKYPDWDPRF GNCSVEQLTE LIESLERKQT IMQDRLRAVL ESQRQRNMYY MNMAEPTQMN  180
HLQQQLPNQD QSLAPLPNSL TVYQYPNMDM YSSFLGGQET GRNEFLSTNM IPNNSFNSNC  240
VYMFQNQFNQ NCSKVEDYSG FPQGTGINNM NVEDYSGSLR AQGPNGLQNM DLQGYNNNSI  300
NTNGFSHQLV QFPAQRAAPA CQYVDGSTQN IRPQFQYSSF VG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009112576.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112576.10.0PREDICTED: agamous-like MADS-box protein AGL103
SwissprotQ9LSB24e-72AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBLM4F9080.0M4F908_BRARP; Uncharacterized protein
STRINGBra037571.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.13e-66AGAMOUS-like 103
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]