PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009112350.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 301aa    MW: 34726.3 Da    PI: 8.9875
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009112350.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.14.3e-2013105199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv      ++s+ lv+p  f+ ++ ++k+ + +++l de gr W+v+ + + + g +v++kGW++F++++ L+ gDf+vF++d  s+f   vk
  XP_009112350.1  13 FFKVC--LPEFSSRKLVIPPAFV-NI-LEKPLPNQVVLLDEIGRLWNVETKTEEGVGDVVFKKGWEKFANDHSLEFGDFLVFSYDAVSRF--SVK 101
                     66766..67788999********.44.5567999****************99999999**************************998999..*** PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f+k
  XP_009112350.1 102 IFDK 105
                     **98 PP
2B332.61.4e-102012841598
                     -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEEE- CS
              B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkvfr 98 
                     ++ +p +f++ +g++ ee  +  l de+g++W +k+ +  +++r+   + W +F+++++L +   ++F+++  ++ ++ + +v++fr
  XP_009112350.1 201 QMEIPTSFLKWNGIEMEE--DFELCDENGKKWPMKVVIHDRGQRF-SPGLWLSFCRSHKLSTSNKCLFEFIvrSDgTCNQVLVRIFR 284
                     689******999988777..57777***********776666665.5668*******************773244455566666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-239108IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-2211108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.60711106IPR003340B3 DNA binding domain
CDDcd100173.10E-1913104No hitNo description
PfamPF023621.0E-1813106IPR003340B3 DNA binding domain
SMARTSM010191.6E-1613106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.5E-16184284IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-15184281IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.673187286IPR003340B3 DNA binding domain
CDDcd100179.03E-9189284No hitNo description
SMARTSM010191.2E-5191286IPR003340B3 DNA binding domain
PfamPF023621.9E-9201284IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MVERSEKGKD MEFFKVCLPE FSSRKLVIPP AFVNILEKPL PNQVVLLDEI GRLWNVETKT  60
EEGVGDVVFK KGWEKFANDH SLEFGDFLVF SYDAVSRFSV KIFDKNGCKK YLVAVTTADR  120
SRVAVEKEPV LVKPVDDIST KRCGKSRKRV PVKEEPSGNR VKDPCEMGCV PENKKHKGFE  180
EPNYKPKNPH FVRNITLCFR QMEIPTSFLK WNGIEMEEDF ELCDENGKKW PMKVVIHDRG  240
QRFSPGLWLS FCRSHKLSTS NKCLFEFIVR SDGTCNQVLV RIFRGRMLTT VTINGYQVLV  300
M
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009112350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112350.10.0PREDICTED: putative B3 domain-containing protein At5g66980
SwissprotQ9FGD21e-111Y5698_ARATH; Putative B3 domain-containing protein At5g66980
TrEMBLA0A078G0340.0A0A078G034_BRANA; BnaA09g07640D protein
TrEMBLM4F7S10.0M4F7S1_BRARP; Uncharacterized protein
STRINGBra037132.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128022130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-113B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]