PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111919.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 359aa    MW: 39797.4 Da    PI: 7.8656
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111919.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.5e-0780105127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ykt+ C  f + GtC  Gd C+FaHg+
  XP_009111919.1  80 YKTRMCAKFKA-GTCMNGDPCNFAHGM 105
                     9**********.*************95 PP
2zf-CCCH17.19.7e-061691831125
                     GTS.--TTTTT-SS-S CS
         zf-CCCH  11 rtG.tCkyGdrCkFaH 25 
                       G +C+yGdrC+F H
  XP_009111919.1 169 F-GeECPYGDRCNFVH 183
                     5.449*********** PP
3zf-CCCH361.1e-11246271127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt++C+ f   G+C++Gd+C+FaHg+
  XP_009111919.1 246 WKTRICMKFEN-GQCPFGDNCHFAHGQ 271
                     8**********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.1E-1577112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-878110IPR000571Zinc finger, CCCH-type
SMARTSM003560.005179105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.06179106IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6158184IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.779158186IPR000571Zinc finger, CCCH-type
SMARTSM003560.018158185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-7160184IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-9241275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-14242274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.882245272IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-7245271IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-9246271IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDSSYSDSRP MFVQSPYGGG WNQTQTNDSM NNEQSESESQ SQPSLKRPRL HDDTVFNPTS  60
NNSSWMAPPS MNKGTANIFY KTRMCAKFKA GTCMNGDPCN FAHGMEDLRQ PPSNWQEIVG  120
PPPPPAVQDR GRERERERER PSSSSVSASN WEDDQKIILR MKLCRKFCFG EECPYGDRCN  180
FVHQDLSKFR DESGKLRESL AISVGTDPAS VENGGGTGSH QVEVNRRGGI PVPASLNNGV  240
VKTVYWKTRI CMKFENGQCP FGDNCHFAHG QAELLHYSGE AVKAVASLSK QTVVPGNEAF  300
AMKPSAAQVV TSDASGLNDE GRRKKCLLKW SDSKKINRIY GDWIDDLPVG QKSTKPVES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129139RGRERERERER
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009111919.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111919.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
RefseqXP_018513784.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
SwissprotQ9LT811e-176C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLM4FAT90.0M4FAT9_BRARP; Uncharacterized protein
STRINGBra038204.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100662536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-172C3H family protein