PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111914.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 363aa    MW: 40593 Da    PI: 6.1953
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111914.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.37.2e-33181235155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rWtpeLHe+Fveav+qLGGse+AtPk++l+l+k +gLt++hvkSHLQkYR+
  XP_009111914.1 181 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLKNPGLTIYHVKSHLQKYRT 235
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.832178238IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-30179237IPR009057Homeodomain-like
SuperFamilySSF466895.55E-17179235IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-23181235IPR006447Myb domain, plants
PfamPF002491.4E-10183234IPR001005SANT/Myb domain
PfamPF143792.1E-20269315IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MNNPVPYQVV SSSGGYMSGY CNVSAVSAHG RTSQTQPPVS TMPSDSLAMQ SSLINNHHPQ  60
EFSDPLDEFF DFSHHVSAPN PQTDGSGVKL VPSVELHEKS EWQTWADQLM SVDNGSEPNW  120
SELLGEPSPH NPNSQVQSCH DLQQTPTPPR QEIIANQQHQ AVSSEEQLGG RNSSASGATS  180
KQRMRWTPEL HEAFVEAVNQ LGGSERATPK AVLKLLKNPG LTIYHVKSHL QKYRTARYKP  240
ETSEATGEPE EKKITSIEDI KSLDMKTSVE ITQALRLQME VQKRLHEQLE IQRSLQLQIE  300
KQGRQLQMMF EKQQKLQENK SSSSELSPKQ CNGTSAEVEF GVETQTRNQT EPALASRKRT  360
RED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-28181239260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-28181239260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-28181239260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-28181239260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-28181239260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-28181239260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-28181239260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-28181239260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.130101e-179bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:20838596}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009111914.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111913.10.0PREDICTED: protein PHR1-LIKE 1 isoform X2
RefseqXP_009111915.10.0PREDICTED: protein PHR1-LIKE 1 isoform X2
RefseqXP_018509563.10.0PREDICTED: protein PHR1-LIKE 1 isoform X2
RefseqXP_018509564.10.0PREDICTED: protein PHR1-LIKE 1 isoform X2
RefseqXP_018509565.10.0PREDICTED: protein PHR1-LIKE 1 isoform X2
RefseqXP_018509566.10.0PREDICTED: protein PHR1-LIKE 1 isoform X2
SwissprotQ8GUN50.0PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLM4F4W90.0M4F4W9_BRARP; Uncharacterized protein
STRINGBra036123.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.30.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  4. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]