PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009111639.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 445aa MW: 50175.7 Da PI: 6.3285 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.7 | 1.4e-50 | 9 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp+GfrF+Ptdeelv +yL++k++g++ ++ +vi+ vdi+k+ePwdLp + v+++++ew fF++ d+ky++g+r nrat +gyWkatgkd++v+ XP_009111639.1 9 LPVGFRFSPTDEELVRYYLRQKINGRDDDV-RVIRAVDICKYEPWDLPdlSVVRTTDSEWLFFCPLDRKYPSGSRMNRATVAGYWKATGKDRKVK 102 79*************************999.99**************96447788999************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s +++ +g+k+tLvfy+grapkg++t W+mheyr+ XP_009111639.1 103 SGSTKIIGVKRTLVFYTGRAPKGTRTCWIMHEYRA 137 *99999***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.28E-57 | 6 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.156 | 9 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-25 | 10 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002230 | Biological Process | positive regulation of defense response to virus by host | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MEVLSLDALP VGFRFSPTDE ELVRYYLRQK INGRDDDVRV IRAVDICKYE PWDLPDLSVV 60 RTTDSEWLFF CPLDRKYPSG SRMNRATVAG YWKATGKDRK VKSGSTKIIG VKRTLVFYTG 120 RAPKGTRTCW IMHEYRATEK DLDGTKPGQN PFVICKLFKK QDVVSEASPE CGVEPAVSSP 180 TVVDEMRSEV ELSEVSLAFP TKEEPKHSTD VSGECQSDIS APEVTTNELD HIDWSSYLEF 240 ESLDHTMFSP LHSQVQSELG SAFNGFQYGS TEPFRNQNDP HIQTQYGSND PDQYMFDLLD 300 STFQIPYELP EMKHLAQPTQ EQILYEPQSL VNKINNDVSE TGIKIRTRRA QAQGCAEQFV 360 MQGNASRRLR LQVNHNSPKP ETDSIKKEVK ETTKGCGSFM RSKSSSEFIL KKVAAMGCSY 420 RGILKAGVVA VVFAMSVCSL TGQFR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-44 | 4 | 161 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-44 | 4 | 161 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-44 | 4 | 161 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-44 | 4 | 161 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-44 | 4 | 161 | 12 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-44 | 4 | 161 | 12 | 166 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator essential for the anti-viral defense called virus basal resistance response pathway (PubMed:11041886, PubMed:15629774, PubMed:18785827, PubMed:24418554). Not involved in HRT-mediated hypersensitive response (HR) and resistance to TCV (PubMed:18785827). Binds DNA non specifically (PubMed:15629774). Activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). {ECO:0000250|UniProtKB:Q9SCK6, ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774, ECO:0000269|PubMed:18785827, ECO:0000269|PubMed:24418554}.; FUNCTION: (Microbial infection) Compromised function in defense response pathway when interacting with the invading viral capsid protein (CP) of turnip crinkle virus (TCV) due to abnormal subcellular localization. {ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009111639.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by bacterial pathogens type III effector proteins (TTEs). {ECO:0000269|PubMed:16553893}.; INDUCTION: (Microbial infection) Accumulates 2 days post infection with turnip crinkle virus (TCV) (PubMed:24418554). {ECO:0000269|PubMed:24418554}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ420440 | 0.0 | KJ420440.1 Brassica napus NAC transcription factor 91-1 (NAC91-1.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009111639.1 | 0.0 | PREDICTED: NAC domain-containing protein 91 isoform X2 | ||||
Swissprot | Q9LKG8 | 0.0 | NAC91_ARATH; NAC domain-containing protein 91 | ||||
TrEMBL | A0A078G527 | 0.0 | A0A078G527_BRANA; BnaA09g04810D protein | ||||
TrEMBL | M4F611 | 0.0 | M4F611_BRARP; Uncharacterized protein | ||||
STRING | Bra036520.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24590.2 | 0.0 | TCV-interacting protein |
Publications ? help Back to Top | |||
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