PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009110939.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 606aa    MW: 67653.4 Da    PI: 9.7604
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009110939.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.5e-07504553147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   XP_009110939.1 504 RRPFSVAEVEALVQAVERLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 553
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.864499558IPR017930Myb domain
SMARTSM007177.0E-7503556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-10504554IPR009057Homeodomain-like
CDDcd116601.02E-16505555No hitNo description
SuperFamilySSF466891.98E-15505586IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MVLQTRLDYG FNGYEVPPTP RAARSPRSAF KKKSENNQIS SSFDLLAAVA GKLLLESGGV  60
SSSSSNNASG DNNEDQCGGK KESGDQMVVG ETHCDHHHDN NAERSFFVSE ILPKAHEMES  120
FNRSPNPNKD FLFGSTSGIT YEYSSEKLGT QELAYEEAKI HNGDCFRSDS NGKKPMLERL  180
NCEPELSRNK DKHHIDNSLN GMENNDGENF SARYATKSFR STLRVGDGRV KKVMSSKYCK  240
VSSNQKDTMV AGSDLDLKPG YYSKKHCFKS LRSEKKYPIK KRRYFDGYTA SQSEETVRNE  300
GLSGSPRKAF LSTIACQKQP ALQSRDSHVK LGIKSFRVPE LSIEVPETAT IGSLKRTVLE  360
AVTTILEGGL RIGVLVHGKK VRDDNKMLLQ TGISLDTLSD TLSFCLETNP PQSTKPLSPK  420
DSDYMRPCYV PHTITRCLPS LGKHAKPSDS VESDLDSKPS SPFRAKPVYS RALIPVSPPL  480
HAQALNVVPP RKPKRSEVAQ RRIRRPFSVA EVEALVQAVE RLGTGRWRDV KLRAFDNAKH  540
RTYVDLKDKW KTLVHTARIS PQQRRGEPVP QELLDRVLMA HAYWSQQQGK QQLLEGPQNL  600
ETSLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-574915934106Telomere binding protein TBP1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009110939.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022546184.10.0telomere repeat-binding protein 5-like isoform X2
SwissprotQ6R0E30.0TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLM4EPG90.0M4EPG9_BRARP; Uncharacterized protein
STRINGBra030689.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.10.0TRF-like 2