PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009110644.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 313aa    MW: 35275.2 Da    PI: 8.4117
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009110644.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3451.9e-14831591195
                     HHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3  11 lksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ++++ l++p  f+++h +gk +++ t tl++    ++W+v    + ++    lt+GWkeF++a++L+ gD+v+Fkl+g++ f  +v+
  XP_009110644.1  83 FQTH-LTIPIVFFSKHiQGK-TNGNTWTLTSdAMDQTWQVIQ--EERR----LTRGWKEFAEAHDLRIGDIVIFKLKGSMVF--HVT 159
                     5566.9**********7555.56668888874777*****99..7777....************************998888..665 PP
2B356.64.8e-18200294298
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     fk++++ ++ +++ l lp   +  + ++ke+ k+ +l + +g+ W+v ++++ ++g y+++ GW++F+ +n+   gD++vF ++g+ ++ +++ v
  XP_009110644.1 200 FKAEVTDSNVREDKLNLPVGATGCNALNKEC-KKAKLVNIEGKAWNVSMRFNESGGFYYIK-GWRKFCAENKCHIGDSFVFNVVGDGNTLPLMCV 292
                     78999999999999*******9888999877.6*****************99999999998.***********************9877799888 PP

                     E- CS
              B3  97 fr 98 
                     ++
  XP_009110644.1 293 CS 294
                     87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-2067166IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-2069170IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.19672164IPR003340B3 DNA binding domain
CDDcd100172.93E-1573161No hitNo description
SMARTSM010193.0E-1875164IPR003340B3 DNA binding domain
PfamPF023622.1E-985156IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-15198289IPR015300DNA-binding pseudobarrel domain
CDDcd100177.52E-14199287No hitNo description
Gene3DG3DSA:2.40.330.106.1E-16199287IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.435199296IPR003340B3 DNA binding domain
SMARTSM010192.5E-15200296IPR003340B3 DNA binding domain
PfamPF023625.0E-16200294IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MVPIPYLKSP NQTRFPLIFG KPFPLSTLRR HNRGRSPLPP PATANSTEEE TPDQQRPIPP  60
IATQPKMVQP QEPHFFQPLL PGFQTHLTIP IVFFSKHIQG KTNGNTWTLT SDAMDQTWQV  120
IQEERRLTRG WKEFAEAHDL RIGDIVIFKL KGSMVFHVTP FGPSCCDIQY TYPNSMEEAH  180
DHQNNTGTGA RFSYSWDYCF KAEVTDSNVR EDKLNLPVGA TGCNALNKEC KKAKLVNIEG  240
KAWNVSMRFN ESGGFYYIKG WRKFCAENKC HIGDSFVFNV VGDGNTLPLM CVCSPSKECL  300
KSAGDIASSS RVN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009110644.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895991e-167AC189599.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH014H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102010.10.0PREDICTED: B3 domain-containing protein REM7-like isoform X1
RefseqXP_009102348.10.0PREDICTED: B3 domain-containing protein REM7-like isoform X1
RefseqXP_009110110.10.0PREDICTED: B3 domain-containing protein REM7-like isoform X1
RefseqXP_009110644.10.0PREDICTED: B3 domain-containing protein REM7-like isoform X1
RefseqXP_009131312.10.0PREDICTED: B3 domain-containing protein REM7-like isoform X1
RefseqXP_013641421.10.0B3 domain-containing protein REM7-like
RefseqXP_013652683.10.0B3 domain-containing protein REM7-like
RefseqXP_013662269.10.0B3 domain-containing protein REM7-like
RefseqXP_013692954.10.0B3 domain-containing protein REM7-like
RefseqXP_013743464.10.0B3 domain-containing protein REM7-like
TrEMBLM4F5X70.0M4F5X7_BRARP; Uncharacterized protein
STRINGBra036483.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16565313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.17e-63B3 family protein