PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009110229.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 203aa    MW: 22486.5 Da    PI: 9.6684
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009110229.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.44e-18160196135
            GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+  nC++++Tp+WR+gp g+k+LCnaCG+++rk+++
  XP_009110229.1 160 CTnmNCKAINTPMWRKGPLGPKSLCNACGIKFRKEKE 196
                     55559*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.8E-6156203IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.52E-10157198No hitNo description
PfamPF003208.4E-16160196IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.2E-12163198IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.042164198IPR000679Zinc finger, GATA-type
CDDcd002023.10E-9164198No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MEKEFDLTLR LGLPSPTVET HLSLNTLTTD QGNNVDRDNN DNGDIRGRRH ILNNNESTNG  60
HEGGKKNVDV NTRFYNLIVN HFAGVGKALN FKPLPMQPSP APVPETPTGS DYVLIDVPAK  120
RAQRNSLAFK NAVDAHETLG RRWGCSGACT AGRINEMRKC TNMNCKAINT PMWRKGPLGP  180
KSLCNACGIK FRKEKERRCN GTE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009110229.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110229.11e-150PREDICTED: GATA transcription factor 29-like
SwissprotQ9LT453e-44GAT29_ARATH; GATA transcription factor 29
TrEMBLM4E5781e-132M4E578_BRARP; Uncharacterized protein
STRINGBra023932.1-P1e-133(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106522234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.15e-41GATA transcription factor 29
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]