PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009110145.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 373aa    MW: 42186.3 Da    PI: 6.4385
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009110145.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.5e-07326226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    k+ lC+ffa  G C  Gd+C F+H+
  XP_009110145.1  3 KRILCKFFAH-GACLKGDNCEFSHD 26
                    889***6666.*************5 PP
2zf-CCCH25.13.1e-083454526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                    +C f++r G C+yG+rC++ H+
  XP_009110145.1 34 ICTFYQR-GNCSYGSRCRYEHV 54
                    7**9999.***********997 PP
3zf-CCCH22.32.4e-07107129326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     +++C+ +a+ G C++Gd+C+ +Hg
  XP_009110145.1 107 QPICS-YAAAGDCPRGDQCPHIHG 129
                     68999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.4E-5127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-7326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.0512956IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-53155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-53153IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-53454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-53453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507104131IPR000571Zinc finger, CCCH-type
SMARTSM003560.0025105130IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-4107129IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.98E-13163237No hitNo description
Gene3DG3DSA:3.30.40.101.2E-9166232IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001623.14E-4172232No hitNo description
PROSITE profilePS5008912.297173231IPR001841Zinc finger, RING-type
PfamPF000977.2E-7173230IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001842.6E-7173230IPR001841Zinc finger, RING-type
PROSITE patternPS005180197206IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.16260288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.197260289IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MSKRILCKFF AHGACLKGDN CEFSHDWKDP SNNICTFYQR GNCSYGSRCR YEHVKPSRPP  60
HPSPASSSTY LSSPFVSERD LSSSPAWTLA SLDNEVNNTD ATKPEDQPIC SYAAAGDCPR  120
GDQCPHIHGD LCPTCQKHCL HPFRPVEREE HKRSCEKKHK QLEALKLSQD VECCVCLERV  180
LSKPTPAERK FGILTECDHA FCIGCIRNWR SSSPSTGMDV NSTLRACPIC RKLSYFVVPS  240
VIWFSDPEEK KGIMDNYRDK LRSIDCKHFN FGDGNCPFGT SCFYKHTVKP GSYAWRHHRP  300
PPRRPRPTSG SNFSEINAFL NMMGNIMSEG GYGPFGFEDS DDDDNELTST DMMMLLMNLD  360
MDSDDDDSNE DSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009110145.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892710.0AC189271.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023L08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110145.10.0PREDICTED: zinc finger CCCH domain-containing protein 69-like isoform X1
SwissprotE0X9N41e-169C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLM4DIQ80.0M4DIQ8_BRARP; Uncharacterized protein
STRINGBra016385.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-141C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]