PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009110111.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 312aa MW: 35273.2 Da PI: 8.5522 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45 | 1.9e-14 | 83 | 159 | 11 | 95 |
HHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 11 lksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++++ l++p f+++h +gk +++ t tl++ ++W+v + ++ lt+GWkeF++a++L+ gD+v+Fkl+g++ f +v+ XP_009110111.1 83 FQTH-LTIPIVFFSKHiQGK-TNGNTWTLTSdAMDQTWQVIQ--EERR----LTRGWKEFAEAHDLRIGDIVIFKLKGSMVF--HVT 159 5566.9**********7555.56668888874777*****99..7777....************************998888..665 PP | |||||||
2 | B3 | 56.6 | 4.8e-18 | 199 | 293 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 fk++++ ++ +++ l lp + + ++ke+ k+ +l + +g+ W+v ++++ ++g y+++ GW++F+ +n+ gD++vF ++g+ ++ +++ v XP_009110111.1 199 FKAEVTDSNVREDKLNLPVGATGCNALNKEC-KKAKLVNIEGKAWNVSMRFNESGGFYYIK-GWRKFCAENKCHIGDSFVFNVVGDGNTLPLMCV 291 78999999999999*******9888999877.6*****************99999999998.***********************9877799888 PP E- CS B3 97 fr 98 ++ XP_009110111.1 292 CS 293 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-20 | 67 | 166 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.22E-20 | 69 | 170 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.196 | 72 | 164 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.26E-15 | 73 | 161 | No hit | No description |
SMART | SM01019 | 3.0E-18 | 75 | 164 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-9 | 85 | 156 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.53E-15 | 197 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.435 | 198 | 295 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.72E-14 | 198 | 286 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 5.8E-16 | 198 | 286 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.5E-15 | 199 | 295 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.0E-16 | 199 | 293 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MVPIPYLKSP NQTRFPLIFG KPFPLSTLRR HNRGRSPLPP PATANSTEEE TPDQQRPIPP 60 IATQPKMVQP QEPHFFQPLL PGFQTHLTIP IVFFSKHIQG KTNGNTWTLT SDAMDQTWQV 120 IQEERRLTRG WKEFAEAHDL RIGDIVIFKL KGSMVFHVTP FGPSCCDIQY TYPNSMEEAH 180 DHQNNRTGAR FSYSWDYCFK AEVTDSNVRE DKLNLPVGAT GCNALNKECK KAKLVNIEGK 240 AWNVSMRFNE SGGFYYIKGW RKFCAENKCH IGDSFVFNVV GDGNTLPLMC VCSPSKECLK 300 SAGDIASSSR VN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009110111.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189599 | 1e-167 | AC189599.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH014H10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009102011.1 | 0.0 | PREDICTED: B3 domain-containing protein REM7-like isoform X2 | ||||
Refseq | XP_009102349.1 | 0.0 | PREDICTED: B3 domain-containing protein REM7-like isoform X2 | ||||
Refseq | XP_009110111.1 | 0.0 | PREDICTED: B3 domain-containing protein REM7-like isoform X2 | ||||
Refseq | XP_009110645.1 | 0.0 | PREDICTED: B3 domain-containing protein REM7-like isoform X2 | ||||
Refseq | XP_009131313.1 | 0.0 | PREDICTED: B3 domain-containing protein REM7-like isoform X2 | ||||
TrEMBL | M4F5X7 | 0.0 | M4F5X7_BRARP; Uncharacterized protein | ||||
STRING | Bra036483.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 6e-64 | B3 family protein |