PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009109914.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 254aa    MW: 29879 Da    PI: 9.4135
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009109914.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.71e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr+g+lKKA+E+S+LCdaev++i+fs++gkl+eyss
  XP_009109914.1  9 KRIENKINRQVTFSKRRAGLLKKAHEISILCDAEVSLIVFSHKGKLFEYSS 59
                    79***********************************************96 PP
2K-box102.45.9e-34821768100
           K-box   8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     +   + + + +++ e+++Lk++ie L+r+qRh+lGedLes+s+keLq+LeqqL++slk+iRs+Kn+l++e++++lq+keke+ een +L+k+++e
  XP_009109914.1  82 ApdSHVNAQTNWSMEYSRLKAKIELLERNQRHYLGEDLESISIKELQNLEQQLDTSLKHIRSRKNQLMHESLNHLQRKEKEILEENSMLTKQIKE 176
                     3336777889**********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.184161IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-34286IPR002100Transcription factor, MADS-box
CDDcd002653.06E-42279No hitNo description
PRINTSPR004041.2E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-303859IPR002100Transcription factor, MADS-box
PfamPF014863.1E-3085174IPR002487Transcription factor, K-box
PROSITE profilePS5129717.05190180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRGRVEMKR IENKINRQVT FSKRRAGLLK KAHEISILCD AEVSLIVFSH KGKLFEYSSE  60
SCMEKVLERY ERYSYAEKQL KAPDSHVNAQ TNWSMEYSRL KAKIELLERN QRHYLGEDLE  120
SISIKELQNL EQQLDTSLKH IRSRKNQLMH ESLNHLQRKE KEILEENSML TKQIKERESI  180
LRTHQNQSEQ QNRSHHVAPQ PQPQLNPYMI SHQASPFLNM GGMYQGEDPT AVRRNRLDLT  240
LEPIYNCNLG YFAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-21174173MEF2 CHIMERA
6byy_B2e-21174173MEF2 CHIMERA
6byy_C2e-21174173MEF2 CHIMERA
6byy_D2e-21174173MEF2 CHIMERA
6bz1_A3e-21174173MEF2 CHIMERA
6bz1_B3e-21174173MEF2 CHIMERA
6bz1_C3e-21174173MEF2 CHIMERA
6bz1_D3e-21174173MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.154370.0bud
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1 (By similarity). {ECO:0000250}.
UniProtProbable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1 (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009109914.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5140450.0AY514045.1 Brassica rapa var. communis DNA binding protein (CAL) mRNA, complete cds.
GenBankAY5140480.0AY514048.1 Brassica rapa subsp. rapa DNA binding protein (CAL) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109914.10.0PREDICTED: transcription factor CAULIFLOWER isoform X1
SwissprotQ6R4S30.0CAL_BRARR; Transcription factor CAULIFLOWER
SwissprotQ6R4S60.0CAL_BRARC; Transcription factor CAULIFLOWER
TrEMBLA0A397YL700.0A0A397YL70_BRACM; Uncharacterized protein
TrEMBLM4D3G70.0M4D3G7_BRARP; Uncharacterized protein
STRINGBra011021.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.11e-155MIKC_MADS family protein