PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009109708.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | VOZ | ||||||||
Protein Properties | Length: 458aa MW: 51085.4 Da PI: 5.1557 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 436.9 | 2.7e-134 | 184 | 401 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaael 95 pppsaflgpkcalwdc+rpaqg +w+qdycssfha+la+neg+pg++pv+rp+gi+lkdgllfaalsak+ gk+vgipecegaatakspwna+el XP_009109708.1 184 PPPSAFLGPKCALWDCPRPAQGLDWFQDYCSSFHASLAFNEGPPGMNPVVRPGGIGLKDGLLFAALSAKAGGKDVGIPECEGAATAKSPWNAPEL 278 89********************************************************************************************* PP VOZ 96 fdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelkl. 189 fdl++le+et+rewlffdkprrafesgnrkqrslpdy+grgwhesrkq+m efgglkrsyymdpqp+++fewhlyeyein++da+alyrlelkl XP_009109708.1 279 FDLTVLESETLREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQIMSEFGGLKRSYYMDPQPLHHFEWHLYEYEINNCDACALYRLELKLv 373 *********************************************************************************************73 PP VOZ 190 vdekksakgkvskdsladlqkklgrlta 217 vd+kk++kgkvs+ds+adlqk++ rlta XP_009109708.1 374 VDGKKNSKGKVSTDSVADLQKQMRRLTA 401 69************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MTGKRSKNPC RSVSHKLFKD KAKNRVDDLQ GMLLDLQFAR KESSALDVTL LEEQVNLMLR 60 EWKSELNEPS PASSLQQGGG TLGSFSSDIC RLLQLCDEED DATSKLAAPK PEPTDQNLEP 120 YGPLADHRKD PSLVVGNNLD GTAHLEYNLQ QEFEPSFNGG FNDCPGYGVE GPLDISAFIP 180 IICPPPSAFL GPKCALWDCP RPAQGLDWFQ DYCSSFHASL AFNEGPPGMN PVVRPGGIGL 240 KDGLLFAALS AKAGGKDVGI PECEGAATAK SPWNAPELFD LTVLESETLR EWLFFDKPRR 300 AFESGNRKQR SLPDYNGRGW HESRKQIMSE FGGLKRSYYM DPQPLHHFEW HLYEYEINNC 360 DACALYRLEL KLVVDGKKNS KGKVSTDSVA DLQKQMRRLT AEFPQENNNN KRCIKGRTKV 420 NTKVATGNVQ NTVEQTIEYG VGEEFNYLVG NLTDYYDN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.21697 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009109708.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB125256 | 0.0 | AB125256.1 Arabidopsis thaliana AtVOZ1 mRNA for transcription factor AtVOZ1, complete cds. | |||
GenBank | AK227014 | 0.0 | AK227014.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-45-I22. | |||
GenBank | AK317006 | 0.0 | AK317006.2 Arabidopsis thaliana AT1G28520 mRNA, partial cds, clone: RAFL16-07-G16. | |||
GenBank | BT020261 | 0.0 | BT020261.1 Arabidopsis thaliana At1g28520 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009109708.1 | 0.0 | PREDICTED: transcription factor VOZ1 isoform X2 | ||||
Swissprot | Q9SGQ0 | 0.0 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | M4D311 | 0.0 | M4D311_BRARP; Uncharacterized protein | ||||
STRING | Bra010864.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 0.0 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
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