PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009109049.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 352aa    MW: 39871.4 Da    PI: 6.1808
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009109049.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-07123143526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+ f++ G Ck Gd+C FaHg
  XP_009109049.1 123 ACPEFRK-GGCKKGDSCEFAHG 143
                     7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.0E-5118145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.319118145IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5118144IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-6123143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4150180IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.582153177IPR000571Zinc finger, CCCH-type
SMARTSM003561.3153176IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MIGENREPYP TVQIPTWPVS EDFTTAEIFS LAMNSPDCSM LKALTALHRY LPSNESYPDS  60
DPEPFGPDSP VDAYSCDHFR MYDFKVLRCS RGRSHDWTEC PYAHPGEKAR RRDPTKYNYS  120
GTACPEFRKG GCKKGDSCEF AHGVFECWLH PSRYRTQPCK DGGGCRRKVC FFAHSPEQLR  180
YVQARSPDRV DSFVRAFQLS ISPVSSSPPV SPRADSESSQ SLSSERGSSY INDVTTSFRN  240
LRFEKLKSFP SYYNNPFRCY QSGFGSPRGS MLGPGFQSLP TTPARPENLD IWENGLEKDP  300
AMERVVESGR ELRAKMFEKL SKENCMDRVE PDQNSGDAPD VGWVSELVMQ ED
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.240784e-54root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009109049.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528161e-149AK352816.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-K04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109049.10.0PREDICTED: zinc finger CCCH domain-containing protein 49-like
SwissprotQ9M0G20.0C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLM4D1I40.0M4D1I4_BRARP; Uncharacterized protein
STRINGBra010334.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.10.0C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]