PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009108921.1

Common Name

WRKY11

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 332aa MW: 36368.1 Da PI: 10.1787

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009108921.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97	1.2e-30	254	311	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+ +d +++++tYegeH+h+ XP_009108921.1 254 DEYSWRKYGQKPIKGSPHPRGYYKCSTFrGCPARKHVERALDDSTMLIVTYEGEHRHN 311 9**********************8766**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	2.7E-16	202	250	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.5E-32	240	312	IPR003657	WRKY domain
PROSITE profile	PS50811	29.976	247	313	IPR003657	WRKY domain
SuperFamily	SSF118290	3.4E-26	250	312	IPR003657	WRKY domain
SMART	SM00774	2.0E-36	252	312	IPR003657	WRKY domain
Pfam	PF03106	2.0E-26	254	310	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MAVDLMRFPK IDDQAAIEEA ASQGLQSMEH LIRVLSNRPD KHNNVDCSEI TDYTVSKFKT 60 VISLLNRTGH ARFRRGPVHS TAASPQKQQQ SQIVKIAQTE APIVSQPTRP AAVVATPSRI 120 VHSNQPSLTL DFTKPTIFGS KSSEIVEFSK ENFSVSLSSS CMSSGITGDG SVSKGSSIFL 180 TSAPSQPVTS SGRPPLAAHP YRKKCLEHEH SLSGDFSGKI SGSGCPCKRR RKNRMKRTVR 240 VPAISSKIAD IPPDEYSWRK YGQKPIKGSP HPRGYYKCST FRGCPARKHV ERALDDSTML 300 IVTYEGEHRH NQSAMQENVS SSGVNDLVFA SA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-20	240	311	2	72	WRKY transcription factor 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.31311	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269\|PubMed:11722756}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269\|PubMed:26433201}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009108921.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269\|PubMed:11722756, ECO:0000269\|PubMed:26433201}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430033	0.0	KF430033.1 Brassica rapa WRKY transcription factor 11 (WRKY11) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001288984.1	0.0	probable WRKY transcription factor 11
Refseq	XP_013720289.1	0.0	probable WRKY transcription factor 11
Refseq	XP_022545725.1	0.0	probable WRKY transcription factor 11
Swissprot	Q9SV15	0.0	WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBL	M4D182	0.0	M4D182_BRARP; Uncharacterized protein
TrEMBL	V5RG46	0.0	V5RG46_BRACM; WRKY transcription factor 11
STRING	Bra010231.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2508	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31550.1	1e-173	WRKY DNA-binding protein 11

Link Out ? help Back to Top
Entrez Gene	103834604

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751] Tang J, et al. Characterization and co-expression analysis of WRKY orthologs involved in responses to multiple abiotic stresses in Pak-choi (Brassica campestris ssp. chinensis). BMC Plant Biol., 2013. 13: p. 188 [PMID:24267479] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Jiang CH, et al. Transcription factors WRKY70 and WRKY11 served as regulators in rhizobacterium Bacillus cereus AR156-induced systemic resistance to Pseudomonas syringae pv. tomato DC3000 in Arabidopsis. J. Exp. Bot., 2016. 67(1): p. 157-74 [PMID:26433201] Ali MA, et al. Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis. J. Plant Physiol., 2018. 226: p. 12-21 [PMID:29689430]