PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009108915.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 504aa    MW: 56783.5 Da    PI: 6.1655
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009108915.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.22.9e-1323911798
                    E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                    ++  +f+++h ++      l + d+s + W+vkl  ++++   + ++GW+eF+ka+  ++gD +vF++dg++ f  +v+v  
  XP_009108915.1 23 TVDDEFLRKHTKV------LLISDSSDKIWKVKL--DGSR---LAGGGWEEFAKAHSFRDGDLLVFRHDGDEIF--HVSVSP 91
                    5566777777644......78889**********..8888...889**********************999999..777654 PP
2B367.32.1e-21164256598
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +++++l ++rl l+k+f+    ++++++ ++ l +e+gr+W+++l+ + +sg +++++GW +F++angL +gD++ Fkl++ +++++v++++ 
  XP_009108915.1 164 RVTPYSLIKDRLDLSKDFTVVSFNEHNKPCEIDLVNEKGRKWTLRLSKNSTSGVFYIRQGWVNFCSANGLSQGDICKFKLSE-NGERPVLRLCP 256
                     578999999*********7666444556669***************77777777*************************987.67779999886 PP
3B369.16.2e-22297394199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     f++v ++++ l++g+l+++  f++e g+kk  s ++tl++++gr+W  +l+++++ g+  ++l+ GW+e++kang+k++D++v++l++ ++ ++v
  XP_009108915.1 297 FLTVKLTPNRLQTGQLYISSVFVNESGIKK--SGEITLMNKDGRKWPSYLQMTGQCGSewFYLRHGWREMCKANGVKVNDSFVLELIW-EDDNPV 388
                     77888999***************9999885..458***************9966655556****************************.77789* PP

                     EEEE-S CS
              B3  94 vkvfrk 99 
                     +k+++k
  XP_009108915.1 389 FKFCSK 394
                     ***987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.731193IPR003340B3 DNA binding domain
SMARTSM010191.8E-121093IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-122791IPR015300DNA-binding pseudobarrel domain
PfamPF023623.7E-82789IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-112889IPR015300DNA-binding pseudobarrel domain
CDDcd100174.64E-102889No hitNo description
PROSITE profilePS5086314.819160257IPR003340B3 DNA binding domain
SMARTSM010192.9E-24160258IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-19163258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-18165257IPR015300DNA-binding pseudobarrel domain
PfamPF023623.2E-19165256IPR003340B3 DNA binding domain
CDDcd100172.11E-19170256No hitNo description
Gene3DG3DSA:2.40.330.102.4E-20292394IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-20294396IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.8E-28297395IPR003340B3 DNA binding domain
PfamPF023625.4E-23297394IPR003340B3 DNA binding domain
PROSITE profilePS5086313.112297397IPR003340B3 DNA binding domain
CDDcd100173.23E-16297393No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MTIPPTFSLF HHRFITGDKP VLTVDDEFLR KHTKVLLISD SSDKIWKVKL DGSRLAGGGW  60
EEFAKAHSFR DGDLLVFRHD GDEIFHVSVS PRSDSCDISH HASPSLVDTD DVETDDDYSE  120
SDDGEDEYDD DDDGGEDDAD CCDSGNIMVN KNTKAGFSCI LRARVTPYSL IKDRLDLSKD  180
FTVVSFNEHN KPCEIDLVNE KGRKWTLRLS KNSTSGVFYI RQGWVNFCSA NGLSQGDICK  240
FKLSENGERP VLRLCPSSNS HEEEEECLEA DAVKTSSIRG CSKEKRKGKK KNSPSQFLTV  300
KLTPNRLQTG QLYISSVFVN ESGIKKSGEI TLMNKDGRKW PSYLQMTGQC GSEWFYLRHG  360
WREMCKANGV KVNDSFVLEL IWEDDNPVFK FCSKAENKGN GNGRLRKKRA CETSIVETER  420
RKRGRPRVSN TNSSNLQRTR QESCSVSDQV ASVKLSILDT LNTVRQFRAD IEAREKNLEA  480
SSLEVDALGE RILGISQILN NNLV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1406422KKRACETSIVETERRKR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in the reproductive meristem. {ECO:0000269|PubMed:10092172}.
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00602PBMTransfer from AT4G31610Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009108915.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108915.10.0PREDICTED: B3 domain-containing protein REM1-like isoform X1
RefseqXP_013720406.10.0B3 domain-containing protein REM1-like isoform X1
RefseqXP_022545720.10.0B3 domain-containing protein REM1-like isoform X1
SwissprotO650980.0REM1_BRAOB; B3 domain-containing protein REM1
TrEMBLM4D1790.0M4D179_BRARP; Uncharacterized protein
STRINGBra010228.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99501736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.11e-166B3 family protein
Publications ? help Back to Top
  1. Franco-Zorrilla JM, et al.
    Identification of genes specifically expressed in cauliflower reproductive meristems. Molecular characterization of BoREM1.
    Plant Mol. Biol., 1999. 39(3): p. 427-36
    [PMID:10092172]