PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009108526.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 249aa MW: 28414.2 Da PI: 6.3045 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.7 | 4.8e-14 | 9 | 93 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffk l ++sg + +p +f ++h g + +k +l++ s + Wev +++ +ltkGWkeF +a++L+ gD+v+Fk++g++ f +v XP_009108526.1 9 FFKPL--LPGFQSG-VAIPLDFYSKHiqGAE--INKPWKLRSdASDQIWEVIR--EGR----TLTKGWKEFTEAHDLRIGDIVIFKHEGDMVF--HV 92 56666..5666676.99*********86433..4445666654999****988..555....4***********************9999988..76 PP E CS B3 95 k 95 + XP_009108526.1 93 T 93 6 PP | |||||||
2 | B3 | 65.6 | 7.4e-21 | 130 | 223 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++++ + k + + lp + + ++g +++ k+++l +++g+sW+ ++ ++ ++g+y++++GW++F+++n+ gD +vF ++g+ ++++++ v+ XP_009108526.1 130 AEVTPTNQKDDKMFLPVEAM-RCGALNQQCKEVKLVNKEGKSWTARFGFSESDGAYYISRGWRKFCRDNRCTNGDLFVFNVVGDGTTTPLLCVCP 223 5678999999*********9.7755556779*****************************************************9999*999996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-19 | 3 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-19 | 4 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.561 | 6 | 98 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.27E-14 | 7 | 95 | No hit | No description |
SMART | SM01019 | 7.3E-19 | 9 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.8E-9 | 17 | 90 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.9E-17 | 126 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-16 | 127 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.366 | 127 | 225 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.59E-14 | 127 | 215 | No hit | No description |
SMART | SM01019 | 3.2E-17 | 128 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.3E-19 | 130 | 223 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
METPREPHFF KPLLPGFQSG VAIPLDFYSK HIQGAEINKP WKLRSDASDQ IWEVIREGRT 60 LTKGWKEFTE AHDLRIGDIV IFKHEGDMVF HVTPFGPSCC DIQYTHPHIV KEEADADDAP 120 TFSYDYCFLA EVTPTNQKDD KMFLPVEAMR CGALNQQCKE VKLVNKEGKS WTARFGFSES 180 DGAYYISRGW RKFCRDNRCT NGDLFVFNVV GDGTTTPLLC VCPERKECTE LLIKHFSRID 240 GSIASTSRN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009108526.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC155338 | 0.0 | AC155338.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH138P04, complete sequence. | |||
GenBank | AP011622 | 0.0 | AP011622.1 Brassica rapa subsp. pekinensis DNA, chromosome: Linkage group A5, BAC clone: KBrB038I07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009108272.1 | 0.0 | PREDICTED: B3 domain-containing protein REM9-like | ||||
Refseq | XP_009139771.1 | 0.0 | PREDICTED: B3 domain-containing protein REM9-like | ||||
Refseq | XP_018509164.1 | 0.0 | PREDICTED: B3 domain-containing protein REM9-like | ||||
TrEMBL | M4DWI0 | 0.0 | M4DWI0_BRARP; Uncharacterized protein | ||||
STRING | Bra020874.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 7e-60 | B3 family protein |