PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009108490.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LSD

Protein Properties

Length: 150aa MW: 16599 Da PI: 4.7022

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009108490.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.4	1.1e-13	62	86	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYPrG ++V+C++C+tV XP_009108490.1 62 CGSCRRLLSYPRGTKHVKCSCCQTV 86 ************************9 PP
2	zf-LSD1	43.7	4.5e-14	100	124	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C++C lL+YP+GApsVRC++C V XP_009108490.1 100 CSNCELLLMYPYGAPSVRCSSCKSV 124 **********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	4.9E-18	59	89	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.6E-11	62	86	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	6.7E-11	97	125	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	9.4E-12	100	124	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MIAEAETKDT MEEIQTQKKE EEEDEEEGPP PGWESTVLPP PPTPISAVTT AAEISEMAQM 60 VCGSCRRLLS YPRGTKHVKC SCCQTVNLVL EAYQVGQVKC SNCELLLMYP YGAPSVRCSS 120 CKSVTDIRED NKRPPWSVLQ GPLKTFSSVR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009108490.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009108490.1	1e-107	PREDICTED: protein LOL2
Swissprot	O65426	7e-64	LOL2_ARATH; Protein LOL2
TrEMBL	M4DWK8	5e-98	M4DWK8_BRARP; Uncharacterized protein
STRING	Bra020902.1-P	8e-99	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13611	22	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	9e-66	lsd one like 2