PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009108396.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 368aa    MW: 42156.9 Da    PI: 4.9548
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009108396.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.55.1e-34131052102
                     HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
    HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                     Fl+k+ye+++d++ ++++sws ++++sf+v+++ ef++++Lpk+Fkh+nfaSF+RQLn+YgF+k + e+         weF+++ F +g+ +l++
  XP_009108396.1  13 FLTKTYEMVDDSSSDSIVSWSpQSNKSFIVWNPPEFSRDLLPKFFKHNNFASFIRQLNTYGFRKADPEQ---------WEFANDDFVRGQPHLMK 98 
                     9********************9999***************************************99988.........***************** PP

                     XXXXXXX CS
    HSF_DNA-bind  96 kikrkks 102
                     +i+r+k 
  XP_009108396.1  99 NIHRRKP 105
                     ****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.7E-609103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.81E-339103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.3E-3610103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.3E-191336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.8E-3013103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDESNHGGSL PPFLTKTYEM VDDSSSDSIV SWSPQSNKSF IVWNPPEFSR DLLPKFFKHN  60
NFASFIRQLN TYGFRKADPE QWEFANDDFV RGQPHLMKNI HRRKPVHSHS SPSLQPHPLT  120
DSERQRMNDQ IERLTKEKEV LLEELHKQEK EREMFQQQVK ELKDQLQHME KRQKTMASFV  180
SQVLEKPELA FNLSPCLQET NERKRRFPRI GLEGSTSPSS QARELQVEQL ESSIAVWENL  240
VSEDSSESLG QETRSMMTLD VDESSTCPES PPLPCIQLSI DTCPTSPRTI DMNSEPDASK  300
EQNTVAPSPP LSAAGGNDVF WQQLLTENPG STGQKEVQSE RKDDKAEKCW WDSRNVNTLT  360
EQLGHLTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-23910325129Heat shock factor protein 1
5d5v_B5e-23910325129Heat shock factor protein 1
5d5v_D5e-23910325129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009108396.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108396.10.0PREDICTED: heat stress transcription factor A-4a-like isoform X2
SwissprotO494030.0HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A397Y9U60.0A0A397Y9U6_BRACM; Uncharacterized protein
STRINGBra020988.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-167heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]