PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009108395.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 370aa    MW: 42357.1 Da    PI: 4.9548
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009108395.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind100.31.9e-31131072102
                     HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT..TEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
    HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY..gFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                     Fl+k+ye+++d++ ++++sws ++++sf+v+++ ef++++Lpk+Fkh+nfaSF+RQLn+Y  gF+k + e+         weF+++ F +g+ +l
  XP_009108395.1  13 FLTKTYEMVDDSSSDSIVSWSpQSNKSFIVWNPPEFSRDLLPKFFKHNNFASFIRQLNTYvtGFRKADPEQ---------WEFANDDFVRGQPHL 98 
                     9********************9999***********************************88899988877.........*************** PP

                     XXXXXXXXX CS
    HSF_DNA-bind  94 lekikrkks 102
                     +++i+r+k 
  XP_009108395.1  99 MKNIHRRKP 107
                     ******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.09E-309105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.1E-579105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.5E-3410105IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.4E-2813105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-131336IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-135264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-136577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MDESNHGGSL PPFLTKTYEM VDDSSSDSIV SWSPQSNKSF IVWNPPEFSR DLLPKFFKHN  60
NFASFIRQLN TYVTGFRKAD PEQWEFANDD FVRGQPHLMK NIHRRKPVHS HSSPSLQPHP  120
LTDSERQRMN DQIERLTKEK EVLLEELHKQ EKEREMFQQQ VKELKDQLQH MEKRQKTMAS  180
FVSQVLEKPE LAFNLSPCLQ ETNERKRRFP RIGLEGSTSP SSQARELQVE QLESSIAVWE  240
NLVSEDSSES LGQETRSMMT LDVDESSTCP ESPPLPCIQL SIDTCPTSPR TIDMNSEPDA  300
SKEQNTVAPS PPLSAAGGND VFWQQLLTEN PGSTGQKEVQ SERKDDKAEK CWWDSRNVNT  360
LTEQLGHLTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-21910516120Heat shock factor protein 1
5d5u_B3e-21910525129Heat shock factor protein 1
5d5v_B3e-21910525129Heat shock factor protein 1
5d5v_D3e-21910525129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009108395.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108394.10.0PREDICTED: heat stress transcription factor A-4a-like isoform X1
RefseqXP_009108395.10.0PREDICTED: heat stress transcription factor A-4a-like isoform X1
SwissprotO494030.0HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A397Y9U60.0A0A397Y9U6_BRACM; Uncharacterized protein
STRINGBra020988.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-165heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]