PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009108394.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HSF | ||||||||
Protein Properties | Length: 370aa MW: 42357.1 Da PI: 4.9548 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 100.3 | 1.9e-31 | 13 | 107 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT..TEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY..gFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl+k+ye+++d++ ++++sws ++++sf+v+++ ef++++Lpk+Fkh+nfaSF+RQLn+Y gF+k + e+ weF+++ F +g+ +l XP_009108394.1 13 FLTKTYEMVDDSSSDSIVSWSpQSNKSFIVWNPPEFSRDLLPKFFKHNNFASFIRQLNTYvtGFRKADPEQ---------WEFANDDFVRGQPHL 98 9********************9999***********************************88899988877.........*************** PP XXXXXXXXX CS HSF_DNA-bind 94 lekikrkks 102 +++i+r+k XP_009108394.1 99 MKNIHRRKP 107 ******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.09E-30 | 9 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 7.1E-57 | 9 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 5.5E-34 | 10 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 6.4E-28 | 13 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-13 | 13 | 36 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-13 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-13 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MDESNHGGSL PPFLTKTYEM VDDSSSDSIV SWSPQSNKSF IVWNPPEFSR DLLPKFFKHN 60 NFASFIRQLN TYVTGFRKAD PEQWEFANDD FVRGQPHLMK NIHRRKPVHS HSSPSLQPHP 120 LTDSERQRMN DQIERLTKEK EVLLEELHKQ EKEREMFQQQ VKELKDQLQH MEKRQKTMAS 180 FVSQVLEKPE LAFNLSPCLQ ETNERKRRFP RIGLEGSTSP SSQARELQVE QLESSIAVWE 240 NLVSEDSSES LGQETRSMMT LDVDESSTCP ESPPLPCIQL SIDTCPTSPR TIDMNSEPDA 300 SKEQNTVAPS PPLSAAGGND VFWQQLLTEN PGSTGQKEVQ SERKDDKAEK CWWDSRNVNT 360 LTEQLGHLTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-21 | 9 | 105 | 16 | 120 | Heat shock factor protein 1 |
5d5u_B | 3e-21 | 9 | 105 | 25 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-21 | 9 | 105 | 25 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-21 | 9 | 105 | 25 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009108394.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009108394.1 | 0.0 | PREDICTED: heat stress transcription factor A-4a-like isoform X1 | ||||
Refseq | XP_009108395.1 | 0.0 | PREDICTED: heat stress transcription factor A-4a-like isoform X1 | ||||
Swissprot | O49403 | 0.0 | HFA4A_ARATH; Heat stress transcription factor A-4a | ||||
TrEMBL | A0A397Y9U6 | 0.0 | A0A397Y9U6_BRACM; Uncharacterized protein | ||||
STRING | Bra020988.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2853 | 28 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18880.1 | 1e-165 | heat shock transcription factor A4A |
Publications ? help Back to Top | |||
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